Unfortunately, this is a known issue on Ubuntu 16.04.

https://gitlab.kitware.com/paraview/paraview/issues/17751


On Tue, Feb 13, 2018 at 2:29 PM, Artem Bodrin <art.bod...@gmail.com> wrote:

> Hello, Daniel.
> I have encountered the same trouble as you, Linux Mint (based on ubuntu
> 16.04). I did not seek for a solution yet (no need for linux version right
> now), but the answer is in the error output. If you inspect  the 3rd party
> protobuf bundled with ParaView VTK submodule, then you can see that
> original version used by VTK is 2.3.0
> So I think, that during compilation it uses the system headers from ubuntu
> (which is 2.6.1), but links on internal VTK protobuf library which is 2.3.0.
> My guessing is - remove dev package of protobuf from system and recompile
> again, it might help.
>
>
> > 13 февр. 2018 г., в 22:03, Daniel Vogler <davog...@ethz.ch> написал(а):
> >
> > Dear all,
> >
> > I am having trouble building Paraview 5.2.0 (This version or older is
> required for a separate plug-in). Other installations of paraview (not
> compiled from source) work fine.
> >
> > I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release and
> installed Qt5.6.3 (also tried 5.6 and 5.7 because I had trouble with Qt
> during the paraview build earlier) in a separate directory. I have my
> (empty) build directory paraview_bin and paraview 5.2.0 source in
> /home/user/software/paraview_bin and /home/user/software/paraview
> respectively.
> >
> > - export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH
> >
> > - ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview
> >
> > - BUILD_TESTING --> OFF
> >
> > - generation and make completes
> >
> > The build works fine, but when I try to execute I get a protobuf error
> >
> >
> > user:~/software/paraview_bin$ ./bin/paraview
> > libprotobuf FATAL /home/user/software/paraview/ThirdParty/protobuf/
> vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
> > This program requires version 2.6.0 of the Protocol Buffer runtime
> library, but the installed version is 2.3.0.
> > Please update your library.
> > If you compiled the program yourself, make sure that your headers are
> from the same version of Protocol Buffers as your link-time library.
> > (Version verification failed in "/build/mir-O8_xaj/mir-0.26.3+
> 16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
> > Aborted
> >
> > although my protoc version seems fine
> >
> > user:~/software/paraview_bin$ protoc --version
> > libprotoc 2.6.1
> >
> > I have tried uninstalling and reinstalling protoc and libprotobuf as
> well as reinstalling Qt afterwards, but can not figure out this error.
> >
> > Any suggestions?
> >
> > Thanks a bunch,
> >
> > Dan
> >
>
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-- 
Cory Quammen
Staff R&D Engineer
Kitware, Inc.
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