Hi Kenny, Do you want to know how to make fasta from 2bit format? Or...? FYI. How to get fasta from 2bit format. 1. Get blat suite from http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc34.zip 2. Compile it. (create ~/bin, ~/bin/x86_64, switch to csh, then make) 3. twoBitToFa [deepr...@s48 ~]$ twoBitToFa twoBitToFa - Convert all or part of .2bit file to fasta usage: twoBitToFa input.2bit output.fa 4. download all 2bit files and convert them ftp://hgdownload.cse.ucsc.edu/gbdb<ftp://hgdownload.cse.ucsc.edu/gbdb/gorGor1/> /
Yours, Namshin Kim On Mon, May 25, 2009 at 4:50 AM, Kenny Daily <kmda...@gmail.com> wrote: > > Has anyone successfully downloaded/built all the genomes for the 44- > way human alignment? Namshin, I saw a post to UCSC about the > availability of the genomes, as some are only in 2bit format. Have you > (or anyone else) gotten all of them, and willing to share your data? > If not, let me know and I'll get them all. Thanks! > > Kenny > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
