Hi, Now that we have additional 2.5TB space in biodb2, it is time to make pre-built NLMSA for newly updated MAF/axtNet. I am building multiz44way first. Let's make some plans...
Yours, Namshin Kim On Tue, May 26, 2009 at 6:39 PM, Namshin Kim <deepr...@gmail.com> wrote: > Hi Kenny, > For SGD, I suggest we make SGD category in worldbase. Currently, all the > genome assemblies are in worldbase.Bio.Seq.Genome, but we can make another > category for SGD like worldbase.SGD.Seq.Genome.YEAST.xxxx > > In order to provide all in UCSC genome browser, we need to make a list of > URLs for genomes, MAF files, axtNet files, liftOver, and etc. 2bit files > need to be processed separately to make fasta sequences. > > How would you like to proceed? > > Yours, > Namshin Kim > > > On Tue, May 26, 2009 at 2:59 PM, Kenny Daily <kmda...@gmail.com> wrote: > >> >> I'd like to help too...possibly also with some non-UCSC genomes? For >> example, yeast biologists (at least the ones I work with) only use >> SGD, not UCSC. UCSC's genome build for sacCer is reaaaallllyyy out of >> date, and isn't compatible with SGD, where the rest of the annotation >> data of interest is. This also means that the alignment is out of date >> as well, which I rebuilt as well with TBA, not Multiz. I could >> definitely share this data as well. >> >> Kenny >> >> On May 25, 6:32 pm, Christopher Lee <l...@chem.ucla.edu> wrote: >> > Hi Namshin, >> > Thanks! It took much longer than Marek and I wanted, but a much >> > bigger disk (2 TB?) has been installed there by the folks who support >> > that machine. Marek knows the details. >> > >> > -- Chris >> >> >> > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
