Hi Kenny, For SGD, I suggest we make SGD category in worldbase. Currently, all the genome assemblies are in worldbase.Bio.Seq.Genome, but we can make another category for SGD like worldbase.SGD.Seq.Genome.YEAST.xxxx
In order to provide all in UCSC genome browser, we need to make a list of URLs for genomes, MAF files, axtNet files, liftOver, and etc. 2bit files need to be processed separately to make fasta sequences. How would you like to proceed? Yours, Namshin Kim On Tue, May 26, 2009 at 2:59 PM, Kenny Daily <kmda...@gmail.com> wrote: > > I'd like to help too...possibly also with some non-UCSC genomes? For > example, yeast biologists (at least the ones I work with) only use > SGD, not UCSC. UCSC's genome build for sacCer is reaaaallllyyy out of > date, and isn't compatible with SGD, where the rest of the annotation > data of interest is. This also means that the alignment is out of date > as well, which I rebuilt as well with TBA, not Multiz. I could > definitely share this data as well. > > Kenny > > On May 25, 6:32 pm, Christopher Lee <l...@chem.ucla.edu> wrote: > > Hi Namshin, > > Thanks! It took much longer than Marek and I wanted, but a much > > bigger disk (2 TB?) has been installed there by the folks who support > > that machine. Marek knows the details. > > > > -- Chris > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
