Hi, Here is a list of MULTIZ files I'd downloaded. I am going to reorganize scripts and make ucsc_update branch, so that anybody can update.
braFlo1_multiz5way ce6_multiz6way oryLat2_multiz5way sacCer1_multiz7way ce4_multiz5way hg18_multiz44way petMar1_multiz6way xenTro2_multiz7way Yours, Namshin Kim On Thu, Jul 16, 2009 at 1:35 PM, Namshin Kim <deepr...@gmail.com> wrote: > Hi, > Now that we have additional 2.5TB space in biodb2, it is time to make > pre-built NLMSA for newly updated MAF/axtNet. I am building multiz44way > first. Let's make some plans... > > Yours, > Namshin Kim > > > > > On Tue, May 26, 2009 at 6:39 PM, Namshin Kim <deepr...@gmail.com> wrote: > >> Hi Kenny, >> For SGD, I suggest we make SGD category in worldbase. Currently, all the >> genome assemblies are in worldbase.Bio.Seq.Genome, but we can make another >> category for SGD like worldbase.SGD.Seq.Genome.YEAST.xxxx >> >> In order to provide all in UCSC genome browser, we need to make a list of >> URLs for genomes, MAF files, axtNet files, liftOver, and etc. 2bit files >> need to be processed separately to make fasta sequences. >> >> How would you like to proceed? >> >> Yours, >> Namshin Kim >> >> >> On Tue, May 26, 2009 at 2:59 PM, Kenny Daily <kmda...@gmail.com> wrote: >> >>> >>> I'd like to help too...possibly also with some non-UCSC genomes? For >>> example, yeast biologists (at least the ones I work with) only use >>> SGD, not UCSC. UCSC's genome build for sacCer is reaaaallllyyy out of >>> date, and isn't compatible with SGD, where the rest of the annotation >>> data of interest is. This also means that the alignment is out of date >>> as well, which I rebuilt as well with TBA, not Multiz. I could >>> definitely share this data as well. >>> >>> Kenny >>> >>> On May 25, 6:32 pm, Christopher Lee <l...@chem.ucla.edu> wrote: >>> > Hi Namshin, >>> > Thanks! It took much longer than Marek and I wanted, but a much >>> > bigger disk (2 TB?) has been installed there by the folks who support >>> > that machine. Marek knows the details. >>> > >>> > -- Chris >>> >>> >>> >> > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
