Hi Marek, since the megatests all save the NLMSA to pygr.Data, there is no reason / need to pass the saveSeqDict=True option (pygr.Data saves the seqDict during the pickling process). So I don't think it makes sense to introduce all these saveSeqDict argument passing changes solely for quieting the megatests' verbosity. I think the logging approach is better -- it gives systematic control of such verbosity issues.
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