Hi,
I have some issue with the latest released version (2.3.0) and
manually build Python 2.7.15, 3.5.2 and 3.6.6 on our CentOS-7 machines.
[tru@sillage ~]$ module add pymol/release/2.3.0-Python-3.6.6
[tru@sillage ~]$ module li
Currently Loaded Modulefiles:
1) Python/3.6.6 3) pymol/release/2.3.0-Python-3.6.6
2) msgpack/2.1.5
[tru@sillage ~]$ pymol
Qt not available, using GLUT/Tk interface
[tru@sillage ~]$ echo $?
0
The different Python versions are isolated through the environment
modules and the issue has only appeared with 2.3.0 and all the python
versions except the version using the system provided python version.
these fails:
pymol/release/2.3.0-Python-2.7.15 pymol/release/2.3.0-Python-3.6.6
pymol/release/2.3.0-Python-3.5.2
this works:
pymol/release/2.3.0-Python-centos7
[tru@sillage ~]$ module add pymol/release/2.3.0-Python-centos7
[tru@sillage ~]$ pymol
PyMOL(TM) Molecular Graphics System, Version 2.3.0.
Copyright (c) Schrodinger, LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
PyMOL is user-supported open-source software. Although some versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing efforts to create open and affordable scientific
software by purchasing a PyMOL Maintenance and/or Support subscription.
More information can be found at "http://www.pymol.org";.
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
Detected OpenGL version 4.6. Shaders available.
Detected GLSL version 4.60.
OpenGL graphics engine:
GL_VENDOR: NVIDIA Corporation
GL_RENDERER: GeForce GT 1030/PCIe/SSE2
GL_VERSION: 4.6.0 NVIDIA 410.93
Detected 6 CPU cores. Enabled multithreaded rendering.
and all the previous versions of pymol are perfectly fine...
pymol/release/1.8.7-Python-2.7.12 pymol/release/2.1.0-Python-3.6.6
pymol/release/1.8.7-Python-2.7.15 pymol/release/2.1.0-Python-centos7
pymol/release/1.8.7-Python-3.5.2 pymol/release/2.2.0-Python-2.7.15
pymol/release/1.8.7-Python-3.6.3 pymol/release/2.2.0-Python-3.5.2
pymol/release/1.8.7-Python-3.6.6 pymol/release/2.2.0-Python-3.6.6
pymol/release/1.8.7-Python-centos7 pymol/release/2.2.0-Python-centos7
pymol/release/2.1.0-Python-2.7.12
pymol/release/2.1.0-Python-2.7.15
pymol/release/2.1.0-Python-3.5.2
pymol/release/2.1.0-Python-3.6.3
Any idea where I can start looking at?
python3 build process details:
module purge && module add Python/${PYTHON_V}
python3 setup.py build
python3 setup.py install --prefix=/....
for python2, I just resplaced python3 by python in the lines above.
Any idea what could be causing this behaviour?
Cheers
Tru
--
Dr Tru Huynh | mailto:t...@pasteur.fr | tel +33 1 45 68 87 37
https://research.pasteur.fr/en/team/structural-bioinformatics/
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
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