Don't split "build" and "install" (or pass --glut to both calls):
python setup.py --glut build install --prefix=...
Cheers,
Thomas
> On Feb 13, 2019, at 5:44 PM, Tru Huynh <t...@pasteur.fr> wrote:
>
> On Wed, Feb 13, 2019 at 05:21:09PM +0100, Tru Huynh wrote:
> ...
>>
>> Trying to install PyQt4_gpl_x11-4.12. on CentOS-7 is another issue :)
>> ...
>>
>
> I went the easy route and pip3 install PyQt5-sip PyQt5,
> and rebuild ...
>
> the Python-3.5.2 version now works fine, but not the Python-3.6.6
> which still fails!
>
> [tru@sillage ~]$ module add pymol/release/2.3.0-Python-3.5.2
> [tru@sillage ~]$ pymol
> PyMOL(TM) Molecular Graphics System, Version 2.3.0.
> Copyright (c) Schrodinger, LLC.
> All Rights Reserved.
>
> Created by Warren L. DeLano, Ph.D.
>
> PyMOL is user-supported open-source software. Although some versions
> are freely available, PyMOL is not in the public domain.
>
> If PyMOL is helpful in your work or study, then please volunteer
> support for our ongoing efforts to create open and affordable scientific
> software by purchasing a PyMOL Maintenance and/or Support subscription.
>
> More information can be found at "http://www.pymol.org";.
>
> Enter "help" for a list of commands.
> Enter "help <command-name>" for information on a specific command.
>
> Hit ESC anytime to toggle between text and graphics.
>
> Detected OpenGL version 4.6. Shaders available.
> Detected GLSL version 4.60.
> OpenGL graphics engine:
> GL_VENDOR: NVIDIA Corporation
> GL_RENDERER: GeForce GT 1030/PCIe/SSE2
> GL_VERSION: 4.6.0 NVIDIA 410.93
> Detected 6 CPU cores. Enabled multithreaded rendering.
>
>
> [tru@sillage ~]$ module add pymol/release/2.3.0-Python-3.6.6
> [tru@sillage ~]$ pymol
> Traceback (most recent call last):
> File
> "/c7/shared/pymol/release/2.3.0-Python-3.6.6/lib/python3.6/site-packages/pymol/__init__.py",
> line 64, in <module>
> import pymol
> File
> "/c7/shared/pymol/release/2.3.0-Python-3.6.6/lib/python3.6/site-packages/pymol/__init__.py",
> line 580, in <module>
> import pymol._cmd
> ImportError:
> /c7/shared/pymol/release/2.3.0-Python-3.6.6/lib/python3.6/site-packages/pymol/_cmd.cpython-36m-x86_64-linux-gnu.so:
> undefined symbol: glutSwapBuffers
>
> Cheers
>
> Tru
> --
> Dr Tru Huynh | mailto:t...@pasteur.fr | tel +33 1 45 68 87 37
> https://research.pasteur.fr/en/team/structural-bioinformatics/
> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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