Hi Tru, There is one thing we changed: The legacy GLUT support is not enabled by default anymore. If that's the issue here, you have two options:
1) install PyQt (recommended) 2) or compile PyMOL with --glut Cheers, Thomas > On Feb 13, 2019, at 3:44 PM, Tru Huynh <t...@pasteur.fr> wrote: > > Hi, > > I have some issue with the latest released version (2.3.0) and > manually build Python 2.7.15, 3.5.2 and 3.6.6 on our CentOS-7 machines. > > [tru@sillage ~]$ module add pymol/release/2.3.0-Python-3.6.6 > [tru@sillage ~]$ module li > Currently Loaded Modulefiles: > 1) Python/3.6.6 3) pymol/release/2.3.0-Python-3.6.6 > 2) msgpack/2.1.5 > [tru@sillage ~]$ pymol > Qt not available, using GLUT/Tk interface > [tru@sillage ~]$ echo $? > 0 > > The different Python versions are isolated through the environment > modules and the issue has only appeared with 2.3.0 and all the python > versions except the version using the system provided python version. > > these fails: > pymol/release/2.3.0-Python-2.7.15 pymol/release/2.3.0-Python-3.6.6 > pymol/release/2.3.0-Python-3.5.2 > > this works: > pymol/release/2.3.0-Python-centos7 > > [tru@sillage ~]$ module add pymol/release/2.3.0-Python-centos7 > [tru@sillage ~]$ pymol > PyMOL(TM) Molecular Graphics System, Version 2.3.0. > Copyright (c) Schrodinger, LLC. > All Rights Reserved. > > Created by Warren L. DeLano, Ph.D. > > PyMOL is user-supported open-source software. Although some versions > are freely available, PyMOL is not in the public domain. > > If PyMOL is helpful in your work or study, then please volunteer > support for our ongoing efforts to create open and affordable scientific > software by purchasing a PyMOL Maintenance and/or Support subscription. > > More information can be found at "http://www.pymol.org";. > > Enter "help" for a list of commands. > Enter "help <command-name>" for information on a specific command. > > Hit ESC anytime to toggle between text and graphics. > > Detected OpenGL version 4.6. Shaders available. > Detected GLSL version 4.60. > OpenGL graphics engine: > GL_VENDOR: NVIDIA Corporation > GL_RENDERER: GeForce GT 1030/PCIe/SSE2 > GL_VERSION: 4.6.0 NVIDIA 410.93 > Detected 6 CPU cores. Enabled multithreaded rendering. > > and all the previous versions of pymol are perfectly fine... > > pymol/release/1.8.7-Python-2.7.12 pymol/release/2.1.0-Python-3.6.6 > pymol/release/1.8.7-Python-2.7.15 pymol/release/2.1.0-Python-centos7 > pymol/release/1.8.7-Python-3.5.2 pymol/release/2.2.0-Python-2.7.15 > pymol/release/1.8.7-Python-3.6.3 pymol/release/2.2.0-Python-3.5.2 > pymol/release/1.8.7-Python-3.6.6 pymol/release/2.2.0-Python-3.6.6 > pymol/release/1.8.7-Python-centos7 pymol/release/2.2.0-Python-centos7 > pymol/release/2.1.0-Python-2.7.12 > pymol/release/2.1.0-Python-2.7.15 > pymol/release/2.1.0-Python-3.5.2 > pymol/release/2.1.0-Python-3.6.3 > > Any idea where I can start looking at? > > python3 build process details: > module purge && module add Python/${PYTHON_V} > python3 setup.py build > python3 setup.py install --prefix=/.... > > for python2, I just resplaced python3 by python in the lines above. > > Any idea what could be causing this behaviour? > > Cheers > > Tru > > -- > Dr Tru Huynh | mailto:t...@pasteur.fr | tel +33 1 45 68 87 37 > https://research.pasteur.fr/en/team/structural-bioinformatics/ > Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
