This is where I am at now (below). What would be the best course of action. 
What would you if this was your mess to clean up? :)

[@dom0 ~]$ sudo pvs
  WARNING: Device /dev/mapper/luks-55a20051-8c1a-435e-a1c8-862493f2d576 has 
size of 1948924598 sectors which is smaller than corresponding PV size of 
1949320573 sectors. Was device resized?
  One or more devices used as PVs in VG qubes_dom0 have changed sizes.
  PV                                                    VG         Fmt  Attr 
PSize   PFree  

  /dev/mapper/luks-55a20051-8c1a-435e-a1c8-862493f2d576 qubes_dom0 lvm2 a--  
929.51g 556.70g


[@dom0 ~]$ sudo vgs
  WARNING: Device /dev/mapper/luks-55a20051-8c1a-435e-a1c8-862493f2d576 has 
size of 1948924598 sectors which is smaller than corresponding PV size of 
1949320573 sectors. Was device resized?
  One or more devices used as PVs in VG qubes_dom0 have changed sizes.
  VG         #PV #LV #SN Attr   VSize   VFree  

  qubes_dom0   1 141   0 wz--n- 929.51g 556.70g


[@dom0 ~]$ sudo lvs qubes_dom0/pool00
  WARNING: Device /dev/mapper/luks-55a20051-8c1a-435e-a1c8-862493f2d576 has 
size of 1948924598 sectors which is smaller than corresponding PV size of 
1949320573 sectors. Was device resized?
  One or more devices used as PVs in VG qubes_dom0 have changed sizes.
  LV     VG         Attr       LSize   Pool Origin Data%  Meta%  Move Log 
Cpy%Sync Convert
  pool00 qubes_dom0 twi-aotz-- 347.98g             86.33  14.67 


                          

[@dom0 ~]$ sudo lsblk -d /dev/mapper/qubes_dom0-root 

NAME            MAJ:MIN RM  SIZE RO TYPE MOUNTPOINT
qubes_dom0-root 253:4    0  1.1T  0 lvm  /


[@dom0 ~]$ sudo df -h /
Filesystem                   Size  Used Avail Use% Mounted on
/dev/mapper/qubes_dom0-root  1.1T  9.7G  1.1T   1% /


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