Hello, I might be missing some point, but this forum is about R & phylogeny. If You have problems with MrBayes, it'd probably be better to ask somewhere else. Seqanswers.com and/or MrBayes' homepage could be good point in this case... Sincerely, Vojtěch
26. srpna 2015 16:16:14 CEST, Felipe Rossetto <rossetto.fel...@gmail.com> napsal: >Hi there, >I'm using R for creating a consensus tree of non discarded burn-in >trees, >and I used the MrBayes .t file for it. But The consensus is unrooted, >and I >have 3 species as outgroup, and I'm not having sucess in root the tree >with >these 3 outgroups (species from the same genus), and when I root it >with >only one species, the outgroup is paraphyletic and it is not true. So >my >questions are: (1) Is here a command for forcing a monophyly of the >outgroup? (2) Is there a command for exporting this consesus tree with >the >PP values? > >Many thanks in advance > >Felipe Rossetto >Herbário FUEL >Departamento de Biologia Animal e Vegetal >Universidade Estadual de Londrina >Rodovia Celso Garcia Cid, PR 445 Km 380, Campus Universitário >Caixa postal 10.011 >CEP: 86057-970 >Londrina, Paraná, Brasil >CV: >http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4211230P7 > > [[alternative HTML version deleted]] > >_______________________________________________ >R-sig-phylo mailing list - R-sig-phylo@r-project.org >https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >Searchable archive at >http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Vojtěch Zeisek http://trapa.cz/cs _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
