OK, then, please, write also commands You used. It helps to help... Generally, for first question I'm not sure, but for the second, write.tree() writes all data presented in respective phylo object. So yes. And, please, if I may ask You, 1) answer to the list (not personally) and 2) usage of tons of exclmation marks doesn't help anyhow. Sincerely, Vojtěch
26. srpna 2015 16:33:29 CEST, Felipe Rossetto <[email protected]> napsal: >I'm creating a consensus tree "IN R" from the trees file generate in >MrBayes!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! > >Felipe Rossetto >Herbário FUEL >Departamento de Biologia Animal e Vegetal >Universidade Estadual de Londrina >Rodovia Celso Garcia Cid, PR 445 Km 380, Campus Universitário >Caixa postal 10.011 >CEP: 86057-970 >Londrina, Paraná, Brasil >CV: >http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4211230P7 > > >2015-08-26 11:31 GMT-03:00 Vojtěch Zeisek <[email protected]>: > >> Hello, >> I might be missing some point, but this forum is about R & phylogeny. >If >> You have problems with MrBayes, it'd probably be better to ask >somewhere >> else. Seqanswers.com and/or MrBayes' homepage could be good point in >this >> case... >> Sincerely, >> Vojtěch >> >> >> 26. srpna 2015 16:16:14 CEST, Felipe Rossetto ><[email protected]> >> napsal: >> >Hi there, >> >I'm using R for creating a consensus tree of non discarded burn-in >> >trees, >> >and I used the MrBayes .t file for it. But The consensus is >unrooted, >> >and I >> >have 3 species as outgroup, and I'm not having sucess in root the >tree >> >with >> >these 3 outgroups (species from the same genus), and when I root it >> >with >> >only one species, the outgroup is paraphyletic and it is not true. >So >> >my >> >questions are: (1) Is here a command for forcing a monophyly of the >> >outgroup? (2) Is there a command for exporting this consesus tree >with >> >the >> >PP values? >> > >> >Many thanks in advance >> > >> >Felipe Rossetto >> >Herbário FUEL >> >Departamento de Biologia Animal e Vegetal >> >Universidade Estadual de Londrina >> >Rodovia Celso Garcia Cid, PR 445 Km 380, Campus Universitário >> >Caixa postal 10.011 >> >CEP: 86057-970 >> >Londrina, Paraná, Brasil >> >CV: >> >>http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4211230P7 >> > >> > [[alternative HTML version deleted]] >> > >> >_______________________________________________ >> >R-sig-phylo mailing list - [email protected] >> >https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> >Searchable archive at >> >http://www.mail-archive.com/[email protected]/ >> >> -- >> Vojtěch Zeisek >> http://trapa.cz/cs >> >> _______________________________________________ >> R-sig-phylo mailing list - [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo >> Searchable archive at >> http://www.mail-archive.com/[email protected]/ -- Vojtěch Zeisek http://trapa.cz/cs _______________________________________________ R-sig-phylo mailing list - [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/[email protected]/
