Just to keep everyone in the loop... ---------- Forwarded message ---------- From: JP <[email protected]> Date: 13 June 2011 18:02 Subject: Re: [Rdkit-discuss] Friday evening problem... Centos RDKit -- again To: Robert DeLisle <[email protected]>
hi there Robert Yes I did that ... so much so that running it a second time gives me [jpebe@homer ~]$ sqlite3 $RDBASE/Data/RDTests.sqlt < $RDBASE/rdkit/Dbase/test_data/RDTests.sqlite SQL error: table basic_2class already exists SQL error: table ferro_noquant already exists SQL error: table ferro_noquant_realact already exists SQL error: table ferro_quant already exists SQL error: table float_2class already exists SQL error: table simple_mols already exists SQL error: table simple_mols_fps already exists SQL error: table simple_mols1 already exists SQL error: table simple_mols1_fp already exists SQL error: table ten_elements already exists SQL error: table ten_elements_dups already exists SQL error: table bit_ensemble_test already exists SQL error: table fromtext already exists SQL error: table fromtext2 already exists SQL error: table StorageTest already exists SQL error: column id is not unique SQL error: column id is not unique SQL error: column id is not unique SQL error: table simple_combined already exists There seems to be some error, particularly the lines: SQL error: column id is not unique SQL error: column id is not unique SQL error: column id is not unique sqlite3 $RDBASE/Data/RDData.sqlt < $RDBASE/rdkit/Dbase/test_data/RDData.sqlite SQL error: table atomic_data already exists SQL error: table lsd_data already exists SQL error: table source_notes already exists Any further ideas? Many thanks for your interest and help... Jean-Paul Ebejer On 13 June 2011 16:24, Robert DeLisle <[email protected]> wrote: > > Did you do these steps? > > Testing the Build (optional, but recommended) from the Building with CMake > wiki > > create the databases used by the Python tests, requires sqlite3 to be > installed: > > sqlite3 $RDBASE/Data/RDTests.sqlt < > $RDBASE/rdkit/Dbase/test_data/RDTests.sqlite > > sqlite3 $RDBASE/Data/RDData.sqlt < $RDBASE/rdkit/Dbase/test_data/RDData.sqlite > > cd to $RDBASE/build and do ctest > > I think I've seen the same failure a few times before, and each time it was > because I forgot to create/update the DB. > > -Kirk > > > > > > On Mon, Jun 13, 2011 at 6:18 AM, JP <[email protected]> wrote: >> >> All but two tests failing (RDKit 2011_03_2) ... >> Attaching logs... >> 71 - pythonTestDirML (Failed) >> 76 - pythonTestDirChem (Failed) >> Should I be worried ? >> Of course I should - I guess the real question is -- are these errors known? >> >> ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
