#10508: Update ATLAS to stable version 3.10
-------------------------------------------------------+--------------------
Reporter: vbraun | Owner: tbd
Type: enhancement | Status:
needs_work
Priority: major | Milestone:
sage-5.3
Component: packages | Resolution:
Keywords: ATLAS | Work issues:
Report Upstream: Reported upstream. No feedback yet. | Reviewers:
Benjamin Jones
Authors: Volker Braun | Merged in:
Dependencies: #13160 | Stopgaps:
-------------------------------------------------------+--------------------
Comment (by kcrisman):
With `SAGE_ATLAS_ARCH=base` on the same machine, I get
{{{
Base configuration on PPC.
Running configure with arch = POWER4, isa extensions (), archdef dir None
Running ../src/configure
--prefix=/Users/student/Desktop/sage-5.3.rc0/local --with-netlib-lapack-
tarfile=/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/lapack-3.4.1.tgz
--cc="gcc" -Si latune 0 -Fa alg -fPIC -C if
"/Users/student/Desktop/sage-5.3.rc0/local/bin/sage_fortran" -C acg
"/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc" -b 32 -O 12 -A 2 -V 0
gcc -I/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/include -g -w -c
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/src/atlconf_misc.c
gcc -I/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/include -g -w -o xconfig
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/src/config.c atlconf_misc.o
./xconfig -d s /Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0
/ATLAS-build/../src/ -d b
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-build
-Si lapackref 1 -Si latune 0 -Fa alg -fPIC -C if
/Users/student/Desktop/sage-5.3.rc0/local/bin/sage_fortran -C acg
/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc -b 32 -O 12 -A 2 -V 0
gcc -I/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/include -g -w -o xisgcc
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/src/IsGcc.c atlconf_misc.o
gcc -I/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/include -g -w -c
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/src/probe_comp.c
gcc -I/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build/../src//CONFIG/include -g -w -o xprobe_comp probe_comp.o
atlconf_misc.o
rm -f config1.out
make -j1 atlas_run
atldir=/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-
build exe=xprobe_comp redir=config1.out \
args="-v 0 -o atlconf.txt -O 12 -A 2 -Si nof77 0 -V 0 -C
ic '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa ic '-fPIC' -C
sm '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa sm '-fPIC' -C
dm '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa dm '-fPIC' -C
sk '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa sk '-fPIC' -C
dk '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa dk '-fPIC' -C
xc '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa xc '-fPIC' -C
gc '/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa gc '-fPIC' -C
if '/Users/student/Desktop/sage-5.3.rc0/local/bin/sage_fortran' -Fa if
'-fPIC' -b 32 -d b
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-build"
cd /Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-build
; ./xprobe_comp -v 0 -o atlconf.txt -O 12 -A 2 -Si nof77 0 -V 0 -C ic
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa ic '-fPIC' -C sm
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa sm '-fPIC' -C dm
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa dm '-fPIC' -C sk
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa sk '-fPIC' -C dk
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa dk '-fPIC' -C xc
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa xc '-fPIC' -C gc
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa gc '-fPIC' -C if
'/Users/student/Desktop/sage-5.3.rc0/local/bin/sage_fortran' -Fa if
'-fPIC' -b 32 -d b
/Users/student/Desktop/sage-5.3.rc0/spkg/build/atlas-3.10.0/ATLAS-build >
config1.out
/bin/sh: line 1: ./xctest: Bad CPU type in executable
make[5]: *** [atlas_run] Error 126
make[4]: *** [IRunCComp] Error 2
Unable to find usable compiler for ICC; abortingMake sure compilers are in
your path, and specify good compilers to configure
(see INSTALL.txt or 'configure --help' for details)make[3]: ***
[atlas_run] Error 1
make[2]: *** [IRun_comp] Error 2
ERROR 512 IN SYSCMND: 'make IRun_comp args="-v 0 -o atlconf.txt -O 12 -A 2
-Si nof77 0 -V 0 -C ic
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa ic '-fPIC' -C sm
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa sm '-fPIC' -C dm
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa dm '-fPIC' -C sk
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa sk '-fPIC' -C dk
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa dk '-fPIC' -C xc
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa xc '-fPIC' -C gc
'/Users/student/Desktop/sage-5.3.rc0/local/bin/gcc' -Fa gc '-fPIC' -C if
'/Users/student/Desktop/sage-5.3.rc0/local/bin/sage_fortran' -Fa if
'-fPIC' -b 32"'
Assembly configured as GAS_PPC (4)
Bad VECFLAG value=0, res='VECFLAG=0
'
Vector ISA Extension configured as (0,0)
Clock rate configured as 700Mhz
Maximum number of threads configured as 1
Cannot detect CPU throttling.
mkdir src bin tune interfaces
cd src ; mkdir testing auxil blas lapack pthreads threads
cd src/blas ; \
mkdir f77reference reference gemv ger gemm kbmm \
level1 level2 level3 pklevel3
cd src/blas/reference ; mkdir level1 level2 level3
cd src/blas/level2 ; mkdir kernel
cd src/blas/pklevel3 ; mkdir gpmm sprk
cd src/blas/level3 ; mkdir rblas kernel
cd src/pthreads ; mkdir blas misc
cd src/pthreads/blas ; mkdir level1 level2 level3
cd src/threads ; mkdir blas lapack
cd src/threads/blas ; mkdir level3 level2
cd tune ; mkdir blas sysinfo lapack threads
cd tune/blas ; mkdir gemm gemv ger level1 level3
cd interfaces ; mkdir blas lapack
cd interfaces/lapack ; mkdir C F77
cd interfaces/lapack/C ; mkdir src testing
cd interfaces/lapack/F77 ; mkdir src testing
cd interfaces/blas ; mkdir C F77
cd interfaces/blas/C ; mkdir src testing
cd interfaces/blas/F77 ; mkdir src testing
cd interfaces/lapack ; mkdir C2F
cd interfaces/lapack/C2F ; mkdir src
mkdir ARCHS
make -j1 -f Make.top startup
Make.top:1: Make.inc: No such file or directory
Make.top:325: warning: overriding commands for target `/AtlasTest'
Make.top:76: warning: ignoring old commands for target `/AtlasTest'
make[3]: *** No rule to make target `Make.inc'. Stop.
make[2]: *** [startup] Error 2
mv: rename lib/Makefile to lib/Make.tmp: No such file or directory
../src/configure: line 450: lib/Makefile: No such file or directory
../src/configure: line 451: lib/Makefile: No such file or directory
../src/configure: line 452: lib/Makefile: No such file or directory
../src/configure: line 453: lib/Makefile: No such file or directory
../src/configure: line 509: lib/Makefile: No such file or directory
DONE configure
Finished configuring ATLAS.
Running make -j1
make -j1 -f Make.top build
Make.top:1: Make.inc: No such file or directory
Make.top:325: warning: overriding commands for target `/AtlasTest'
Make.top:76: warning: ignoring old commands for target `/AtlasTest'
make[3]: *** No rule to make target `Make.inc'. Stop.
make[2]: *** [build] Error 2
------------------------------------------------------------
File "./spkg-install", line 476, in <module>
assert_success(rc, bad='Failed to build ATLAS.', good='Finished
building ATLAS core.')
File "./spkg-install", line 76, in assert_success
traceback.print_stack(file=sys.stdout)
------------------------------------------------------------
Error: Failed to build ATLAS.
real 1m2.106s
user 0m15.388s
sys 0m25.736s
************************************************************************
Error installing package atlas-3.10.0
************************************************************************
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/10508#comment:171>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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