On Sun, Sep 08, 2013 at 05:14:35PM +0200, Alexandre Gramfort wrote:
> I would be in favor of a HierarchicalClustering object that supports
> various linkage
> criteria.

> something like:

> hc = HierarchicalClustering(linkage='single')

> linkage='ward' would be another option.

Yes, indeed. This is what I am working on in my branch. I was planning to
try to merge this in with Ward, complete and average linkage, as single
linkage is best implemented with a different algorithm (indeed, an MST). 

The branch still requires finishing work to get things like arbitrary
metrics supported, as well as documentation, but the core of the work in
done.

https://github.com/scikit-learn/scikit-learn/pull/2199

Cheers,

Gaƫl

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