[Dspace-tech] Idle In Transaction Problem

[Joseph Greene]

Hi,
This may have been fixed in more recent versions of DSpace; we're on 1.8.2.
I'd been getting this problem a lot, to the point where our tomcat was
shutting down about once a week.

https://wiki.duraspace.org/display/DSPACE/Idle+In+Transaction+Problem

I wrote a script to try and find what DSpace code coincides with the idle
processes, see below.

It's not airtight, but I did find that /feed/* came up a lot (10%) in the
list of requests. Has anyone ever looked at the feeds code to see if it is
closing transactions properly?

Regards,
Joseph


Guts of the bash script:

pgIdle=($(ps -ef | grep 'postgres.*idle')) #array of idle processes
idleProcs=$(( ${#pgIdle[@]} - 1 )) #count the idle processes, minus one to
get rid of the grep command

while [ $idleProcs -le $1 ]
do
pgIdle=($(ps -ef | grep 'postgres.*idle')) 
idleProcs=$(( ${#pgIdle[@]} - 1 ))
done < <(tail -n 0 -f /var/log/apache2/access.log >> ./pgtest.out) #output
the logfile as long as the while loop runs

Collected data for a week using cron, running every five minutes until two
idle processes built up:
*/5 * * * * /home/dspace/pgtest.sh 2



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Re: [Dspace-tech] SWORD METS ingest -- specify primary dmdSec

[Joseph Greene]

No problem Tim. Credit for CURL goes to Stewart Lewis (I think!) but was
really helpful.


-Original Message-
From: Tim Donohue [mailto:tdono...@duraspace.org] 
Sent: 28 April 2015 14:59
To: Joseph Greene
Cc: dspace-tech@lists.sourceforge.net
Subject: Re: SWORD METS ingest -- specify primary dmdSec

Hi Joseph,

Thanks for following back up! And also thanks for your note about using CURL
for depositing.

I went ahead and added a CURL note to our official documentation for the
SWORDv1 Server:
https://wiki.duraspace.org/display/DSDOC5x/SWORDv1+Server#SWORDv1Server-Depo
sittoSWORDServer

- Tim

On 4/28/2015 7:51 AM, Joseph Greene wrote:
> Hi,
>
> I've gotten this working. For others that may be interested, I 
> followed Tim Donohue's recommendation of adding a line into the 
> DSpaceMETSIngester.java file, circa line 92:
>
> params.addProperty("dmd",[value]);
>
> e.g.:
>
> String userDmd = null;
>
>  //JG 2015-04-27: Set primary mets:dMd type to PROQUEST. 
> Forces Ethesis deposits to
>  // be ingested using ProQuest's proprietary metadata instead 
> of EPDCX. Other SWORD
>  // deposits will not find PROQUEST in the METS so will go 
> through the usual decision
>  //  making process.
>
>  params.addProperty("dmd", "PROQUEST");  // add this line
>
>  if (params != null)
>  {
>  userDmd = params.getProperty("dmd");
>  }
> ...etc.
>
> I renamed the class to DSpaceMETSIngester1.java
>
> Edited DSpace.cfg:
>
> crosswalk.submission.PROQUEST.stylesheet =
> crosswalks/sword-proquest-ingest.xsl   <---added this line
> ...
> mets.default.ingest.crosswalk.PROQUEST = PROQUEST<---added this line
> ...
> plugin.named.org.dspace.content.packager.PackageIngester = \
>org.dspace.content.packager.DSpaceAIPIngester = AIP, \
>org.dspace.content.packager.PDFPackager  = Adobe PDF, PDF, \
>org.dspace.content.packager.DSpaceMETSIngester1 = METS, \  
> <edited this line
>org.dspace.content.packager.RoleIngester = DSPACE-ROLES
>
> Rebuilt DSpace and now it imports EPDCX metadata for standard METS 
> files, and ProQuest's proprietary metadata standard for ETDs sent via 
> SWORD from ProQuest, which contain both EPDCX and the ProQuest 
> metadata in separate  elements.
>
> FYI for anyone testing SWORD looking for a client, CURL is the way to 
> go,
> e.g.:
>
> curl -i --data-binary "@sword-2015-04-17(1).original.zip" -H
> "Content-Disposition: filename=sword-2015-04-17(1).original.zip" -H
> "Content-Type: application/zip" -H "X-Packaging:
> http://purl.org/net/sword-types/METSDSpaceSIP"; -u 
> sword.u...@ucd.ie:[password]
> http://researchrepository.ucd.ie/sword/deposit/10197/2878
>
> Joseph
>
>
> -Original Message-
> From: Joseph Greene [mailto:joseph.gre...@ucd.ie]
> Sent: 27 April 2015 10:00
> To: 'Tim Donohue'
> Subject: RE: [Dspace-tech] SWORD METS ingest -- specify primary dmdSec
>
> Thanks Tim, I thought I'd need to modify DSpaceMETSIngester.java -- 
> thanks for the tip. I need to keep SWORD using the METS ingester 
> because our CRIS sends us deposits using EPDCX. Now I'm looking at 
> adding SWORD deposits for e-theses from ProQuest, who have a 
> proprietary dMd type, following a rudimentary EPDCX dMd in the same mets.
>
> I'll give it a go and report back to the list.
>
> Joseph
>
> -Original Message-
> From: Tim Donohue [mailto:tdono...@duraspace.org]
> Sent: 24 April 2015 20:01
> To: Joseph Greene; dspace-tech@lists.sourceforge.net
> Subject: Re: [Dspace-tech] SWORD METS ingest -- specify primary dmdSec
>
> Hi Joseph,
>
> That "dmd" param can be passed via the commandline using the 'dspace 
> packager' command (e.g. './dspace packager -t METS -o dmd=MODS').  You 
> can see this parameter as an option if you type this on the commandline:
>
> ./dspace packager -t METS -h
>
> It can also be specified programmatically using the "PackageParameters"
> class. That's what the .getProperty("dmd") call is referencing in 
> DSpaceMETSIngester here:
> https://github.com/DSpace/DSpace/blob/master/dspace-api/src/main/java/
> org/ds
> pace/content/packager/DSpaceMETSIngester.java#L93
>
> Unfortunately though, it looks like there's no way to currently tweak 
> this via SWORD.  SWORD initializes its own PackageParameter settings 
> here but doesn't include anything for "dmd":
> https://github.com/DSpace/DSpace/blob/master/dspace-sword/src/main/jav
> a/org/
> dspace/sword/SWORDMETSIngester.java#L77
&

Re: [Dspace-tech] SWORD METS ingest -- specify primary dmdSec

[Joseph Greene]

Hi,

I've gotten this working. For others that may be interested, I followed Tim
Donohue's recommendation of adding a line into the DSpaceMETSIngester.java
file, circa line 92:

params.addProperty("dmd",[value]);

e.g.:

String userDmd = null;

//JG 2015-04-27: Set primary mets:dMd type to PROQUEST. Forces
Ethesis deposits to
// be ingested using ProQuest's proprietary metadata instead of
EPDCX. Other SWORD
// deposits will not find PROQUEST in the METS so will go through
the usual decision
//  making process.

params.addProperty("dmd", "PROQUEST");  // add this line 

if (params != null)
{
userDmd = params.getProperty("dmd");
}
...etc.

I renamed the class to DSpaceMETSIngester1.java

Edited DSpace.cfg:

crosswalk.submission.PROQUEST.stylesheet =
crosswalks/sword-proquest-ingest.xsl   <---added this line
...
mets.default.ingest.crosswalk.PROQUEST = PROQUEST<---added this line
...
plugin.named.org.dspace.content.packager.PackageIngester = \
  org.dspace.content.packager.DSpaceAIPIngester = AIP, \
  org.dspace.content.packager.PDFPackager  = Adobe PDF, PDF, \
  org.dspace.content.packager.DSpaceMETSIngester1 = METS, \  <edited
this line
  org.dspace.content.packager.RoleIngester = DSPACE-ROLES

Rebuilt DSpace and now it imports EPDCX metadata for standard METS files,
and ProQuest's proprietary metadata standard for ETDs sent via SWORD from
ProQuest, which contain both EPDCX and the ProQuest metadata in separate
 elements.

FYI for anyone testing SWORD looking for a client, CURL is the way to go,
e.g.:

curl -i --data-binary "@sword-2015-04-17(1).original.zip" -H
"Content-Disposition: filename=sword-2015-04-17(1).original.zip" -H
"Content-Type: application/zip" -H "X-Packaging:
http://purl.org/net/sword-types/METSDSpaceSIP"; -u
sword.u...@ucd.ie:[password]
http://researchrepository.ucd.ie/sword/deposit/10197/2878

Joseph


-Original Message-
From: Joseph Greene [mailto:joseph.gre...@ucd.ie] 
Sent: 27 April 2015 10:00
To: 'Tim Donohue'
Subject: RE: [Dspace-tech] SWORD METS ingest -- specify primary dmdSec

Thanks Tim, I thought I'd need to modify DSpaceMETSIngester.java -- thanks
for the tip. I need to keep SWORD using the METS ingester because our CRIS
sends us deposits using EPDCX. Now I'm looking at adding SWORD deposits for
e-theses from ProQuest, who have a proprietary dMd type, following a
rudimentary EPDCX dMd in the same mets.

I'll give it a go and report back to the list.

Joseph

-Original Message-
From: Tim Donohue [mailto:tdono...@duraspace.org]
Sent: 24 April 2015 20:01
To: Joseph Greene; dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] SWORD METS ingest -- specify primary dmdSec

Hi Joseph,

That "dmd" param can be passed via the commandline using the 'dspace
packager' command (e.g. './dspace packager -t METS -o dmd=MODS').  You can
see this parameter as an option if you type this on the commandline:

./dspace packager -t METS -h

It can also be specified programmatically using the "PackageParameters" 
class. That's what the .getProperty("dmd") call is referencing in
DSpaceMETSIngester here:
https://github.com/DSpace/DSpace/blob/master/dspace-api/src/main/java/org/ds
pace/content/packager/DSpaceMETSIngester.java#L93

Unfortunately though, it looks like there's no way to currently tweak this
via SWORD.  SWORD initializes its own PackageParameter settings here but
doesn't include anything for "dmd":
https://github.com/DSpace/DSpace/blob/master/dspace-sword/src/main/java/org/
dspace/sword/SWORDMETSIngester.java#L77

So, the only way (that I can see) to tweak this for SWORD, would be to add
some custom Java code to the SWORDMETSIngester.  Something along the lines
of:

params.addProperty("dmd",[value]);

The only other option would be to change the
"mets-ingester.package-ingester" for SWORD to use "AIP" format as the
ingester (though I'm not sure how well that'd work). The AIP ingester
defaults to using "DIM" first, then MODS, while the METS ingester looks for
MODS first, then simple Dublin Core.

- Tim


On 4/24/2015 11:40 AM, Joseph Greene wrote:
> Hi,
>
> I've seen in the documentation that it's possible to specify which 
> metadata section in the METS file gets used in a sword ingest  (in 
> org.dspace.content.packagerDSpaceMETSIngester). I also came across 
> this, which describes its genesis:
>
> https://jira.duraspace.org/browse/DS-386
>
> I've seen calls to getProperty("dmd") but I don't know where that 'dmd'
> property resides -- dspace.cfg? another class cal

[Dspace-tech] SWORD METS ingest -- specify primary dmdSec

[Joseph Greene]

Hi,

I've seen in the documentation that it's possible to specify which metadata
section in the METS file gets used in a sword ingest  (in
org.dspace.content.packagerDSpaceMETSIngester). I also came across this,
which describes its genesis:

https://jira.duraspace.org/browse/DS-386

I've seen calls to getProperty("dmd") but I don't know where that 'dmd'
property resides -- dspace.cfg? another class calling DSpaceMETSIngester?
Psychic waves?

Does anyone know how to set the primary ?

On DSpace 1.8.2, SWORD server 1.0.

Many thanks,
Joseph


Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie





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Re: [Dspace-tech] Bulk withdraw tool?

[Joseph Greene]

Hi,

I've written a java class to do this. I put it here
http://hdl.handle.net/10197/6335 in case anyone would like to use it in
future.

Description and usage:

DSpace utility to withdraw and reinstate a list of items. Withdraws items
via the DSpace API. Removes items from browse indexes, OAI-PMH interface and
updates the dc.description.provenence field as expected. Tested on DSpace
1.8.2. Install in
[dspace_src]/dspace/modules/api/src/main/java/org/dspace/content and rebuild
DSpace. Call by running [dspace]/bin/dspace dsrun
org.dspace.content.BulkWithdraw login_email password itemIdsFile
[reinstate]. ItemIDsFile is a list of DSpace item_ids to be withdrawn, one
item_id per line. The default mode is withdraw. Optionally, add 'reinstate'
as the fourth argument to completely reverse the process.

Disclaimer:

This program is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the Free
Software Foundation, either version 3 of the License, or (at your option)
any later version. This program is distributed in the hope that it will be
useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License for more details. You should have received a copy of the GNU
General Public License along with this program. If not, see
<http://www.gnu.org/licenses/>. This program uses third-party libraries
which may be distributed under different licenses to the above. Information
about these licenses is detailed at <http://www.dspace.org/license/>.

Regards,
Joseph

-Original Message-
From: Joseph Greene [mailto:joseph.gre...@ucd.ie] 
Sent: 30 January 2015 09:58
To: dspace-tech@lists.sourceforge.net
Subject: Bulk withdraw tool?

Hi,

I have a list of item_ids based on an sql query, e.g.

item_id
--
2
3
15
23
...
(582 rows)

I'd like to withdraw the items from DSpace. I assume it isn't safe to just
change the item.withdrawn field to 'true' (side effects for solr, oai_pmh,
etc). Is this correct?

Does anyone have or know of a tool to withdraw these via the command line?
After looking I only found the bulk metadata edit tool, but these items are
scattered across several collections.

Best regards,
Joseph


Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie






--
Dive into the World of Parallel Programming. The Go Parallel Website,
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Re: [Dspace-tech] Best approach to bulk delete empty collections

[Joseph Greene]

Hi Steven,

collection2item contains 2 values, collection_id and item_id -- it maps all
items to any collections they are in (a many to many relationship between
item and collection.

The owning collection is in the item record. So a mapped item is one that
appears twice or more in collection2item, and in all but one entry in
collection2item, the corresponding collection_id != the
item.owning_collection.

Another way to put it is c2i has every item in it and every collection in
it. Owning collection (in the item record) only has the original collection
it was uploaded to. Mapped collections appear in c2i but so do unmapped
items.

It may shed some light on it to run the two queries to at least narrow it
down. You could maybe look at them via the UI after that?

Joseph



-Original Message-
From: Hayles, Steven [mailto:s...@leicester.ac.uk] 
Sent: 30 January 2015 16:16
To: 'dspace-tech@lists.sourceforge.net'
Subject: RE: Best approach to bulk delete empty collections

Hi Joseph

I was thinking that I'd need to look in the following tables to fully
understand what was going on with a collection

collection
collection2item
workflowitem
workspaceitem
collection_item_count
item

Is collection2item what handles mappings, while item.owning_collection
identifies to 'real' parent collection of an item?

Thanks

Steven

Steven Hayles
Systems Analyst

IT Services, University of Leicester,
Propsect House, 94 Regent Rd, Leicester, LE1 7DA, UK

T: +44 (0)116 229 7950
E: s...@le.ac.uk

The Queen's Anniversary Prizes 1994, 2002 & 2013 THE Awards Winners
2007-2013

Elite without being elitist

Follow us on Twitter http://twitter.com/uniofleicester or visit our Facebook
page https://facebook.com/UniofLeicester 




-Original Message-
From: Joseph Greene [mailto:joseph.gre...@ucd.ie] 
Sent: 30 January 2015 11:40
To: dspace-tech@lists.sourceforge.net
Cc: Hayles, Steven
Subject: RE: Best approach to bulk delete empty collections

Actually that query was a little restrictive. This may be better:

select collection_id, name from collection where collection_id not in
(select owning_collection from item where in_archive = true and
withdrawn = false);

So any collection that shows 0 items live, but may have withdrawn items and
may also have items in submitters' workflows (ie cancelled uploads). Problem
is 'virtual' collections with only mapped items, they will appear as having
no items. Combining the results of the two queries may help...I'm sure
there's a way to output the count of mapped items into the results.

Joseph

-Original Message-
From: Joseph Greene [mailto:joseph.gre...@ucd.ie] 
Sent: 30 January 2015 11:28
To: dspace-tech@lists.sourceforge.net
Cc: s...@leicester.ac.uk
Subject: RE: Best approach to bulk delete empty collections

Hello Steven,

As a start here is a query that will identify empty collections:

select collection_id, name from collection where collection_id not in 
(select distinct collection_id from collection2item);

To my knowledge that should work on 1.4.2's database (was on 1.4.2 recently
enough).

Best regards,
Joseph

Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie




Message: 2
Date: Fri, 30 Jan 2015 09:26:41 + (GMT)
From: Steven Hayles 
Subject: [Dspace-tech] Best approach to bulk delete empty collections
(DSpace 4.2)
To: dspace-tech@lists.sourceforge.net
Message-ID: 
Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed


Hi

We have a DSpace 4.2 instance with many empty collections. What's the best
approach to finding and deleting them?

Thanks

Steven Hayles
Systems Analyst

IT Services, University of Leicester,
Propsect House, 94 Regent Rd, Leicester, LE1 7DA, UK

T: +44 (0)116 229 7950
E: s...@le.ac.uk

The Queen's Anniversary Prizes 1994, 2002 & 2013 THE Awards Winners
2007-2013

Elite without being elitist

Follow us on Twitter http://twitter.com/uniofleicester or visit our Facebook
page https://facebook.com/UniofLeicester







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Re: [Dspace-tech] Best approach to bulk delete empty collections

[Joseph Greene]

Actually that query was a little restrictive. This may be better:

select collection_id, name from collection where collection_id not in
(select owning_collection from item where in_archive = true and
withdrawn = false);

So any collection that shows 0 items live, but may have withdrawn items and
may also have items in submitters' workflows (ie cancelled uploads). Problem
is 'virtual' collections with only mapped items, they will appear as having
no items. Combining the results of the two queries may help...I'm sure
there's a way to output the count of mapped items into the results.

Joseph

-Original Message-
From: Joseph Greene [mailto:joseph.gre...@ucd.ie] 
Sent: 30 January 2015 11:28
To: dspace-tech@lists.sourceforge.net
Cc: s...@leicester.ac.uk
Subject: RE: Best approach to bulk delete empty collections

Hello Steven,

As a start here is a query that will identify empty collections:

select collection_id, name from collection where collection_id not in 
(select distinct collection_id from collection2item);

To my knowledge that should work on 1.4.2's database (was on 1.4.2 recently
enough).

Best regards,
Joseph

Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie




Message: 2
Date: Fri, 30 Jan 2015 09:26:41 + (GMT)
From: Steven Hayles 
Subject: [Dspace-tech] Best approach to bulk delete empty collections
(DSpace 4.2)
To: dspace-tech@lists.sourceforge.net
Message-ID: 
Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed


Hi

We have a DSpace 4.2 instance with many empty collections. What's the best
approach to finding and deleting them?

Thanks

Steven Hayles
Systems Analyst

IT Services, University of Leicester,
Propsect House, 94 Regent Rd, Leicester, LE1 7DA, UK

T: +44 (0)116 229 7950
E: s...@le.ac.uk

The Queen's Anniversary Prizes 1994, 2002 & 2013 THE Awards Winners
2007-2013

Elite without being elitist

Follow us on Twitter http://twitter.com/uniofleicester or visit our Facebook
page https://facebook.com/UniofLeicester






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leadership blogs to news, videos, case studies, tutorials and more. Take a
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Re: [Dspace-tech] Best approach to bulk delete empty collections

[Joseph Greene]

Hello Steven,

As a start here is a query that will identify empty collections:

select collection_id, name from collection where collection_id not in 
(select distinct collection_id from collection2item);

To my knowledge that should work on 1.4.2's database (was on 1.4.2 recently
enough).

Best regards,
Joseph

Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie




Message: 2
Date: Fri, 30 Jan 2015 09:26:41 + (GMT)
From: Steven Hayles 
Subject: [Dspace-tech] Best approach to bulk delete empty collections
(DSpace 4.2)
To: dspace-tech@lists.sourceforge.net
Message-ID: 
Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed


Hi

We have a DSpace 4.2 instance with many empty collections. What's the best
approach to finding and deleting them?

Thanks

Steven Hayles
Systems Analyst

IT Services, University of Leicester,
Propsect House, 94 Regent Rd, Leicester, LE1 7DA, UK

T: +44 (0)116 229 7950
E: s...@le.ac.uk

The Queen's Anniversary Prizes 1994, 2002 & 2013 THE Awards Winners
2007-2013

Elite without being elitist

Follow us on Twitter http://twitter.com/uniofleicester or visit our Facebook
page https://facebook.com/UniofLeicester





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hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
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[Dspace-tech] Bulk withdraw tool?

[Joseph Greene]

Hi,

I have a list of item_ids based on an sql query, e.g.

item_id
--
2
3
15
23
...
(582 rows)

I'd like to withdraw the items from DSpace. I assume it isn't safe to just
change the item.withdrawn field to 'true' (side effects for solr, oai_pmh,
etc). Is this correct?

Does anyone have or know of a tool to withdraw these via the command line?
After looking I only found the bulk metadata edit tool, but these items are
scattered across several collections.

Best regards,
Joseph


Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie





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sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
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Re: [Dspace-tech] Free web tool for analyzing DSpace SEO analysis

[Joseph Greene]

That's great Bram, handy tool,
Joseph

-Original Message-
From: dspace-tech-requ...@lists.sourceforge.net
[mailto:dspace-tech-requ...@lists.sourceforge.net] 
Sent: 22 September 2014 09:13
To: dspace-tech@lists.sourceforge.net
Subject: DSpace-tech Digest, Vol 101, Issue 84

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Today's Topics:

   1. Re: Free web tool for analyzing DSpace SEO analysis (Bram Luyten)


--

Message: 1
Date: Mon, 22 Sep 2014 10:12:34 +0200
From: Bram Luyten 
Subject: Re: [Dspace-tech] Free web tool for analyzing DSpace SEO
analysis
To: Michael White 
Cc: "dspace-tech@lists.sourceforge.net"

Message-ID:

Content-Type: text/plain; charset="utf-8"

You're welcome Michael!

speaking of the devil ... after the work to put the links directly on the
email confirmation page, Gmail suddenly decided that it does want to send
the emails again.
So now you'll see a confirmation page stating "sorry, emails can't be send",
while emails ARE effectively working again.

cheers,

Bram

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*Bram Luyten* +1 202 684 6365
*2888 Loker Avenue East, Suite 315, Carlsbad, CA. 92010* *Esperantolaan 4,
Heverlee 3001, Belgium* www.atmire.com



On 22 September 2014 10:08, Michael White  wrote:

> Hi Bram,
>
>
>
> Many thanks for this (and for your previous response to my initial
> questions and the link to the extended analysis for my repo) J
>
>
>
> *> 1. Discrepancy in item count*
>
>
>
> > This should now be fixed. If anyone finds other discrepancies, please
> let me know.
>
>
>
> Just to confirm that this looks much better now ? it is now showing the
> correct Item count for our repository J
>
>
>
> *> 2. Extended analysis emails*
>
>
>
> > Emails are still broken, but after entering your email address you will
> immediately get the link to the extended
>
> > analysis in the webUI as a temporary workaround.
>
>
>
> Thanks again for sending me a link to the extended analysis for our
> repository ? it all came back looking OK, so that?s nice J
>
>
>
> *> 3. Sense and nonsense of my repository speed measurements*
>
>
>
> > Found that my measurement was actually measuring more than just ONE page
> request. Changed this so you
>
> > should get considerably lower response time reports now.
>
>
>
> And I can confirm that this is also now looking much better from here ?
> our response time is now showing as around 300ms (down from 2000ms), so
> that is also nice to see J
>
>
>
> Thanks again,
>
>
>
> Mike
>
> Michael White
> eLearning Liaison and Development (eLD)
> Information Services
> S8, Library
> University of Stirling
> Stirling SCOTLAND
> FK9 4LA
>
> Email: michael.wh...@stir.ac.uk
> Tel: +44 (0) 1786 466877
> Fax: +44 (0) 1786 466880
>
> http://www.stir.ac.uk/is/staff/about/teams/aldt/#eld
>
>
>
> *From:* bluy...@gmail.com [mailto:bluy...@gmail.com] *On Behalf Of *Bram
> Luyten
> *Sent:* 20 September 2014 13:45
> *To:* Michael White
> *Cc:* dspace-tech@lists.sourceforge.net
> *Subject:* Re: [Dspace-tech] Free web tool for analyzing DSpace SEO
> analysis
>
>
>
> Hi,
>
>
>
> short update after rolling out a few changes directly on
> http://dspacecheck-atmire.rhcloud.com/
>
>
>
> *1. Discrepancy in item count*
>
>
>
> This should now be fixed. If anyone finds other discrepancies, please let
> me know.
>
>
>
> *2. Extended analysis emails*
>
>
>
> Emails are still broken, but after entering your email address you will
> immediately get the link to the extended analysis in the webUI as a
> temporary workaround.
>
>
>
> *3. Sense and nonsense of my repository speed measurements*
>
>
>
> Found that my measurement was actually measuring more than just ONE page
> request. Changed this so you should get considerably lower response time
> reports now.
>
>
>
> best regards,
>
>
>
> Bram
>
>
> --
>
> [image: logo]
>
> *Bram Luyten* +1 202 684 6365
> *2888 Loker Avenue East, Suite 315, Carlsbad, CA. 92010*
> *Esperantolaan 4, Heverlee 3001, Belgium*
> www.atmire.com
>

>
>
>
>
> On 20 September 2014 12:56, Bram Luyten  wrote:
>
> Hi Michael,
>
>
>
> thanks for your feedback on the prototype of this new tool:
>
>
>
> *1. Discrepancy in item count*
>
>
>
> Thanks for reporting this, as it will help me debugging. The script
> retrieves the item 

[Dspace-tech] Special characters/diacritics in indexes

[Joseph Greene]

Hello,
I have been trying to get an author's name to appear in the author browse
(http://researchrepository.ucd.ie/search-filter?field=author) but can't seem
to get it to work. The name is Ó Gráda, Cormac. There are plenty of other Ó
...'s in there (e.g. Ó hÉigeartaigh) that do appear for a search on 'Ó', but
for whatever reason, Ó Gráda does not appear.

(Prof Ó Gráda is quite prolific on Famine, Irish emigration, economic
history. We have 200+ of papers by him.
http://researchrepository.ucd.ie/browse?type=author&value=%C3%93%20Gr%C3%A1d
a,%20Cormac)

(I believe) I've ensured that the diacritics are UTF-8 (Ó and á) (they
weren't originally)
I've re-indexed (~/dspace/bin/dspace index-update)
DSpace 1.8.2

Ó Gráda does come up any way you spell it in
http://researchrepository.ucd.ie/browse (browsing by author). Not entirely
sure how I navigated to that though...

Any pointers?

Joseph

Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie




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[Dspace-tech] DSpace SWORD and Drupal

[Joseph Greene]

Hi,
Does anyone know of a SWORD client module for Drupal? We have a research
group adding publication metadata and PDFs to Drupal, and would love for
them to be able to add a 'send to DSpace' button into their Drupal.

I've read through the code of https://www.drupal.org/project/sword, but
unless I'm missing something, this implements a SWORD server, I'm looking
for a Drupal SWORD Client...

Any pointers?

Joseph

Joseph Greene
Research Repository Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
joseph.gre...@ucd.ie
http://researchrepository.ucd.ie




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[Dspace-tech] Item lost in the workflow due to removing eperson from group

[Joseph Greene]

This may be a bug. It's fairly obscure:

On Dspace 1.8.2. I added an eperson to a workflow pool, and when articles
appeared in that pool, I removed the eperson from the group. The eperson
could still see the articles in the pool, and accepted a task, then returned
it to the task pool. The item disappeared from the workflow, for any eperson
or group, even after I added that eperson back to the original workflow
pool.

Then I couldn't delete the eperson due to items being assigned to them
(though it appeared there weren't)

Solution was to look in logs for workflow_item_id, update the table so that
the item is assigned to you:

update workflowitem set owner = [your eperson id] where workflow_id =
[workflow_item_id];
update workflowitem set state = 2 where workflow_id = [workflow_item_id];

Then you can 'return to task pool' and it becomes visible.

Then to delete the eperson,
delete from tasklistitem where eperson_id = [eperson_id];

And you can delete the eperson from the XMLUI.

Hope that saves someone a bit of time.

Joseph



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Re: [Dspace-tech] Returning a taken task back to Pool?

[Joseph Greene]

This cheatsheet I made a couple years ago may help. I haven't tried on our
1.8.2, but I doubt it's changed. The usual caveats re. updating  your
database (backup backup backup), I accept no responsibility for damage, etc.
etc.

==start=

How to move items backwards (or forwards) in workflow
2010-06-30

Find the item_id by searching for title in metadatavalue:

select item_id, text_value from metadatavalue
where metadata_field_id = 64 and text_value like 'A General Solution%';

Change the worflow state for the item, be sure to set it to an 'owned' state
(2, 4 or 6):

[select * from workflowitem where item_id = 2394;]

UPDATE workflowitem SET state = 2 where item_id = 2394;

state   step

1   step 1
2   step 1 owned (do-later pool)
3   step 2
4   step 2 owned
5   step 3
6   step 3 owned

Get the eperson_id of the person you want to send it back to:

select eperson_id, email from eperson order by email;

Set the item's owner to the eperson_id you just found:

update workflowitem set owner = 14 where item_id = 2394;

Item should now appear in 'owner's' do-later pool.

(When you set it to a non-owned state, the item can't be seen by anyone
assigned to the pool for some reason, hence the need to set owner and
state=owned)

==end=


Joseph Greene
Research Repository and Systems Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
(353 0)1 716 7686
joseph.gre...@ucd.ie

http://www.ucd.ie/library
http://researchrepository.ucd.ie



-Original Message-
From: dspace-tech-requ...@lists.sourceforge.net
[mailto:dspace-tech-requ...@lists.sourceforge.net] 
Sent: 27 May 2013 14:31
To: dspace-tech@lists.sourceforge.net
Subject: DSpace-tech Digest, Vol 85, Issue 121

Send DSpace-tech mailing list submissions to
dspace-tech@lists.sourceforge.net

To subscribe or unsubscribe via the World Wide Web, visit
https://lists.sourceforge.net/lists/listinfo/dspace-tech
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When replying, please edit your Subject line so it is more specific than
"Re: Contents of DSpace-tech digest..."


Today's Topics:

   1. Re: Returning a taken task back to Pool? (helix84)
   2. Re: Fwd: [Dspace-devel] Item state definitions
  (Pottinger, Hardy J.)
   3. Re: Moving image and bitstream up (Webshet, Sisay (ILRI))
   4. Re: Moving image and bitstream up (helix84)
   5. Re: Moving image and bitstream up (Webshet, Sisay (ILRI))
   6. Re: Change permissions in batch (Miguel Angel Robledo)
   7. Re: Change permissions in batch (helix84)


--

Message: 1
Date: Mon, 27 May 2013 14:14:39 +0200
From: helix84 
Subject: Re: [Dspace-tech] Returning a taken task back to Pool?
To: Michael White 
Cc: "dspace-tech@lists.sourceforge.net"

Message-ID:

Content-Type: text/plain; charset="utf-8"

Workflow is an area I have almost no experience with. But if you want to
look around in the database, look at the *workflowitem* and
*workspaceitem*tables. You'll be interested in the
*item_id* and *owner* columns. To look up *item_id* by title, you can do
SELECT item_id, textvalue FROM metadatavalue WHERE textvalue = 'Your Item
Title'. *owner* will have a value corresponding to *eperson_id*, which you
can look up in the *eperson* table.

Don't forget to make backup of your database before doing any changes!


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette
-- next part --
An HTML attachment was scrubbed...

--

Message: 2
Date: Mon, 27 May 2013 12:26:34 +
From: "Pottinger, Hardy J." 
Subject: Re: [Dspace-tech] Fwd: [Dspace-devel] Item state definitions
To: "" 
Cc: dspace-tech 
Message-ID: <8351f1cd-1013-47d7-a35f-15e0833cc...@missouri.edu>
Content-Type: text/plain; charset="us-ascii"

In a way, this is a start at documenting our business rules, which is useful
work in and of itself, but would be especially useful for building a
"business logic layer", which is something many of us have expressed an
interest in. As Peter Dietz observed more than a year ago, it is currently
up to each interface to implement these rules.

My comment at this point is "carry on." But, I should also add, "How can we
help?"

--Hardy

Sent from my iPad

On May 27, 2013, at 3:16 AM, "helix84"  wrote:

> On Mon, May 27, 2013 at 9:52 AM, Andrea Bollini 
wrote:
>> As I haven't received yet any feedback or comment I'm trying to get more
visibility on the tech li

Re: [Dspace-tech] XSLT 2.0 crosswalk

[Joseph Greene]

(Sorry Pascal) -- and some answers to my own question, from Helix84 -- 
http://dspace.2283337.n4.nabble.com/Why-does-DSpace-use-XSLT-1-0-td3750179.html 

To clarify earlier, I have replaced the file below but not getting any results 
when I use xslt/xpath 2.0 functions. Perhaps I've missed something.

Joseph

-Original Message-
From: Joseph Greene [mailto:joseph.gre...@ucd.ie] 
Sent: 13 March 2013 13:11
To: heli...@centrum.sk; p.bec...@tu-berlin.de
Cc: dspace-tech@lists.sourceforge.net
Subject: RE: [Dspace-tech] XSLT 2.0 crosswalk

Hi Ivan, Paul,

I've tested the solution below but now I realise that it has to do with 
crosswalk testing. Is there any solution for using XSLT 2.0 in a dissemination 
crosswalk, or would this require serious development?

FYI DSpace 1.8.2

Regards,
Joseph


Joseph Greene
Research Repository and Systems Librarian James Joyce Library University 
College Dublin
(353 0)1 716 7398
(353 0)1 716 7686
joseph.gre...@ucd.ie

http://www.ucd.ie/library
http://researchrepository.ucd.ie



-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: 06 February 2013 10:02
To: Joseph Greene
Cc: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] XSLT 2.0 crosswalk

Hello Joseph,

I just realized I answered a different question than you asked, so please 
ignore it.

And here's the correct URL of the pull request Pascal sent you:
https://github.com/DSpace/DSpace/pull/174

You can apply it simply by replacing XSLTDisseminationCrosswalk.java with this 
new version:

https://raw.github.com/tuub/DSpace/1d7dcd281d01f12e4d62a22fc6385bb744a91e1e/dspace-api/src/main/java/org/dspace/content/crosswalk/XSLTDisseminationCrosswalk.java


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette 
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette



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Re: [Dspace-tech] XSLT 2.0 crosswalk

[Joseph Greene]

Hi Ivan, Paul,

I've tested the solution below but now I realise that it has to do with 
crosswalk testing. Is there any solution for using XSLT 2.0 in a dissemination 
crosswalk, or would this require serious development?

FYI DSpace 1.8.2

Regards,
Joseph


Joseph Greene
Research Repository and Systems Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
(353 0)1 716 7686
joseph.gre...@ucd.ie

http://www.ucd.ie/library
http://researchrepository.ucd.ie



-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: 06 February 2013 10:02
To: Joseph Greene
Cc: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] XSLT 2.0 crosswalk

Hello Joseph,

I just realized I answered a different question than you asked, so please 
ignore it.

And here's the correct URL of the pull request Pascal sent you:
https://github.com/DSpace/DSpace/pull/174

You can apply it simply by replacing XSLTDisseminationCrosswalk.java with this 
new version:

https://raw.github.com/tuub/DSpace/1d7dcd281d01f12e4d62a22fc6385bb744a91e1e/dspace-api/src/main/java/org/dspace/content/crosswalk/XSLTDisseminationCrosswalk.java


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette 
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


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Re: [Dspace-tech] XSLT 2.0 crosswalk

[Joseph Greene]

Thanks again, sounds much more do-able. Do you think this will work on DSpace 
1.8.2? Are there conflicts with Java version for example?

Joseph

-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: 06 February 2013 10:02
To: Joseph Greene
Cc: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] XSLT 2.0 crosswalk

Hello Joseph,

I just realized I answered a different question than you asked, so please 
ignore it.

And here's the correct URL of the pull request Pascal sent you:
https://github.com/DSpace/DSpace/pull/174

You can apply it simply by replacing XSLTDisseminationCrosswalk.java with this 
new version:

https://raw.github.com/tuub/DSpace/1d7dcd281d01f12e4d62a22fc6385bb744a91e1e/dspace-api/src/main/java/org/dspace/content/crosswalk/XSLTDisseminationCrosswalk.java


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette 
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


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Re: [Dspace-tech] XSLT 2.0 crosswalk

[Joseph Greene]

Many thanks Helix84

Sounds time consuming... I may consider raising this with our contractor, who 
are always keen to donate code back to the community.

Best regards,
Joseph

-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: 05 February 2013 14:27
To: Joseph Greene
Cc: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] XSLT 2.0 crosswalk

On Tue, Feb 5, 2013 at 1:19 PM, Joseph Greene  wrote:
> Does anyone know if it is possible to use xslt 2.0 in the xslt 
> crosswalk plugin? Documentation only seems to point to xslt 1.0.

Unfortunately not, this is a TODO task: [1]

There is info there in the last comment about how to modify Cocoon to support 
XSLT 2.0. This will require you to rebuild DSpace's Cocoon dependency from our 
repository (this one: [2]) and then rebuild DSpace using your locally modified 
Cocoon artifact (from your local Maven repo). If you attempt to do that, please 
report back with your results. Thanks.


[1] https://jira.duraspace.org/browse/DS-995
[2] https://github.com/DSpace/dspace-cocoon-servlet-service-impl


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette 
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


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[Dspace-tech] XSLT 2.0 crosswalk

[Joseph Greene]

Does anyone know if it is possible to use xslt 2.0 in the xslt crosswalk
plugin? Documentation only seems to point to xslt 1.0.

Regards,
Joseph


Joseph Greene
Research Repository and Systems Librarian
James Joyce Library
University College Dublin
(353 0)1 716 7398
(353 0)1 716 7686
joseph.gre...@ucd.ie

http://www.ucd.ie/library
http://researchrepository.ucd.ie





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Re: [Dspace-tech] flying-man.jpg

[Joseph Greene]

It sort of looks like he's naked,

http://irserver/dspace/image/flying-man.jpg



-Original Message-
From: Tim Donohue [mailto:tdono...@duraspace.org] 
Sent: 21 August 2012 17:04
To: Joseph Greene
Cc: heli...@centrum.sk; dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] flying-man.jpg

Funny, I don't recall ever seeing the "flying-man.jpg" before. :)

Going back historically to our old SVN, it looks like that JPG was initially
added some 10+ years ago by Rob Tansley (one of the original creators of
DSpace).  So, that means it's actually been in every version of DSpace since
1.0. :)

https://svn.duraspace.org/view/dspace?view=rev&revision=169

Not sure why it was initially added (knowing Rob, it could have even been a
bit of a joke).

- Tim

On 8/21/2012 10:43 AM, helix84 wrote:
> On Tue, Aug 21, 2012 at 4:46 PM, Joseph Greene 
wrote:
>> Can anyone tell me why flying-man.jpg is included in the DSpace core
code?
>> There must be a story there.
>
> My guess is that it got there by accident:
>
> https://github.com/DSpace/DSpace/commits/master/dspace-jspui/dspace-js
> pui-webapp/src/main/webapp/image/flying-man.jpg
>
> https://github.com/DSpace/DSpace/commit/2c34bf1bf813c1e5dacde60a865a9d
> db5fdee3ba#dspace-jspui/dspace-jspui-webapp/src/main/webapp/image/flyi
> ng-man.jpg
>
> It's not referenced anywhere in the codebase, so it can be removed safely.
>
> Regards,
> ~~helix84
>
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[Dspace-tech] flying-man.jpg

[Joseph Greene]

Can anyone tell me why flying-man.jpg is included in the DSpace core code?
There must be a story there.

Joseph


Joseph Greene
Systems Librarian and Research Repository Manager
University College Dublin

(353 0)1 716 7398
joseph.gre...@ucd.ie
www.ucd.ie/library
http://irserver.ucd.ie



-Original Message-
From: dspace-tech-requ...@lists.sourceforge.net
[mailto:dspace-tech-requ...@lists.sourceforge.net] 
Sent: 21 August 2012 13:11
To: dspace-tech@lists.sourceforge.net
Subject: DSpace-tech Digest, Vol 76, Issue 34

Send DSpace-tech mailing list submissions to
dspace-tech@lists.sourceforge.net

To subscribe or unsubscribe via the World Wide Web, visit
https://lists.sourceforge.net/lists/listinfo/dspace-tech
or, via email, send a message with subject or body 'help' to
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You can reach the person managing the list at
dspace-tech-ow...@lists.sourceforge.net

When replying, please edit your Subject line so it is more specific than
"Re: Contents of DSpace-tech digest..."


Today's Topics:

   1. Re: [SPAM] Restructuring Mirage theme - "Search box", "Browse
  By" and "News" (helix84)
   2. [SPAM] Re: [SPAM] Restructuring Mirage theme - "Search box",
  "Browse By" and "News" (Mark Kariuki)
   3. dspace.org offline for 5 days... (shannon)
   4. Re: [SPAM] Restructuring Mirage theme - "Search box", "Browse
  By" and "News" (helix84)
   5. Re: [SPAM] Restructuring Mirage theme - "Search box", "Browse
  By" and "News" (Lighton Phiri)
   6. Re: dspace.org offline for 5 days... (helix84)
   7. [SPAM] Re: [SPAM] Restructuring Mirage theme - "Search box",
  "Browse By" and "News" (Mark Kariuki)
   8. [SPAM] Re: [SPAM] Restructuring Mirage theme - "Search box",
  "Browse By" and "News" (Mark Kariuki)


--

Message: 1
Date: Tue, 21 Aug 2012 11:07:21 +0200
From: helix84 
Subject: Re: [Dspace-tech] [SPAM] Restructuring Mirage theme - "Search
box", "Browse By" and "News"
To: lighton.ph...@gmail.com
Cc: dspace-tech@lists.sourceforge.net
Message-ID:

Content-Type: text/plain; charset=UTF-8

On Tue, Aug 21, 2012 at 10:57 AM, Lighton Phiri 
wrote:
> Is this documented anywhere else? I am working with the XMLUI Classic 
> theme and would as well want to disable the search box in the body. I 
> tried making changes to the theme XSL file but nothing seems to have 
> changed.

This would work in any theme unless there's a more specific rule that takes
priority, but this is already very specific rule, so I doubt that's the
problem. It works for me in the Reference theme just fine.
I guess you just need to clear the Cocoon cache [1]. I just put the question
into FAQ [2].

[1]
https://wiki.duraspace.org/display/DSPACE/TechnicalFaq#TechnicalFaq-Clearing
Cocoon%28XMLUI%29cache
[2]
https://wiki.duraspace.org/display/DSPACE/TechnicalFaq#TechnicalFaq-HowdoIre
movethesearchboxfromthefrontpageinXMLUI%3F

Regards,
~~helix84



--

Message: 2
Date: Tue, 21 Aug 2012 02:12:08 -0700 (PDT)
From: Mark Kariuki 
Subject: [Dspace-tech] [SPAM] Re: [SPAM] Restructuring Mirage theme -
"Search box", "Browse By" and "News"
To: dspace-tech@lists.sourceforge.net
Message-ID: <1345540328381-4656970.p...@n4.nabble.com>
Content-Type: text/plain; charset=UTF-8

Hi Helix84,

Thanks for the swift reply, however, I placed that snippet in my theme's xsl
but the search box still appeared. I have not setup Discovery as yet, I
don?t know if this could be the issue, what I meant is that I wanted it
completely gone, so that the only search form is the one on the right hand
panel.

Attached is a collection view screenshot

1. This is the search box that appears throughout the DSpace hierarchy that
I wanted to hide, I tried searching through the install for the i18n message
text, so that I can find where it is referenced in an XSL file, but it isn?t
referenced anywhere else apart from messages.xml

2. This is the Browse By section that appears in the collections, I would
want to remove that also or atleast move it to the right panel as well, the
main idea being that I want the items in the repository to appear first,
have more emphasis.

3. This is the news segment that I would want to move also.

Thanks

Mark
Junior Developer
FAO Somalia
http://dspace.2283337.n4.nabble.com/file/n4656970/this2.jpg 



--
View this message in context:
http://dspace.2283337.n4.nabble.com/Restructuring-Mirage-theme-Search-box-Br
owse-By-and-News-tp4656966p4656970.html
Sent from the DSpace - Tech mailing list archive at Nabble.com.



--

Message: 3
Da

[Dspace-tech] OAI-PMH and the Millennium ILS

[Joseph Greene]

We want to harvest our DSpace records with our Millennium ILS using a
customized crosswalk, but Innovative Interfaces has told me that the
harvester cannot specify the metdataPrefix parameter. For certain they have
implemented the set_spec param, but can only take the 'default' metadata
format.

 

I would assume that the default metadata prefix is oai_dc, but it is
actually harvesting a different crosswalk. The crosswalk it harvests
coincidentally (or not) is in the first position when sending the
ListMetadataFormats verb
(http://irserver.ucd.ie/dspace_oai/request?verb=ListMetadataFormats). Have
tried everything I know to reorder the list with no luck, so no way to test
this theory.

 

(You'd think that you could just change the order of the crosswalks in
dspace.cfg, but unless I'm missing something I believe it's more to do with
the hashmap that the configs are stored in in the OAICat library. Lines 105,
122 here
<http://code.google.com/p/oaicat/source/browse/trunk/src/ORG/oclc/oai/server
/verb/ListMetadataFormats.java?r=2> )

 

Has anyone had any experience with this, or wish that III would implement
the metadataPrefix parameter? 

 

Many thanks,

Joseph

 

-------

Joseph Greene

Institutional Repository Project Manager

325 James Joyce Library

University College Dublin

 

(353 0)1 716 7398

joseph.gre...@ucd.ie

http://irserver.ucd.ie

 

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[Dspace-tech] Management of Manakin

[Joseph Greene]

I understand that Manakin is the default user interface from 1.5 forward,
can anyone tell me if that means that the codebase is managed by the DSpace
community/Duraspace? Was TDL -- who is it now?

http://www.tdl.org/about-tdl/projects/#manakin


With best regards,
Joseph

---
Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin

(353 0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie


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Re: [Dspace-tech] DSpace as RePEc data provider

[Joseph Greene]

Hello Andrea,

EconomistsOnline.org provides data to RePEc -- see
http://www.neeoproject.eu/ for more. We send data to economistsonline via
oai-pmh and it in turn forwards data onto repec, e.g. :

Address on IDEAS: <http://ideas.repec.org/s/ner/ucddub.html>
Address on EconPapers: <http://econpapers.repec.org/paper/nerucddub/>
Address on EconomistsOnline:
<http://www.economistsonline.org/publications?q=RePEc:ner:ucddub>

Regards,

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/



-Original Message-
From: dspace-tech-requ...@lists.sourceforge.net
[mailto:dspace-tech-requ...@lists.sourceforge.net] 
Sent: 22 March 2010 09:16
To: dspace-tech@lists.sourceforge.net
Subject: DSpace-tech Digest, Vol 47, Issue 57

Send DSpace-tech mailing list submissions to
dspace-tech@lists.sourceforge.net

To subscribe or unsubscribe via the World Wide Web, visit
https://lists.sourceforge.net/lists/listinfo/dspace-tech
or, via email, send a message with subject or body 'help' to
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You can reach the person managing the list at
dspace-tech-ow...@lists.sourceforge.net

When replying, please edit your Subject line so it is more specific
than "Re: Contents of DSpace-tech digest..."


Today's Topics:

   1. Re: Processing of multipart/form-data request failed. Stream
  ended unexpectedly (Andrea Bollini)
   2. DSpace as RePEc data provider (Andrea Bollini)
   3. Re: [Dspace-devel] [GSOC] Discuss with the community  the
  feasibility of the attached project idea (Mark Diggory)
   4. Re: Browse by Author/Subject in Chinese (Allen Lam)
   5. Re: [Dspace-general] dspace 1.6.0 on redhat   enterprise 5
  (Fabien COMBERNOUS)


--

Message: 1
Date: Sun, 21 Mar 2010 10:50:57 +0100
From: Andrea Bollini 
Subject: Re: [Dspace-tech] Processing of multipart/form-data request
failed. Stream ended unexpectedly
To: Tim Donohue 
Cc: dspace-tech@lists.sourceforge.net
Message-ID: <4ba5ec01.3030...@cilea.it>
Content-Type: text/plain; charset="iso-8859-1"

I have notice that I have missed to share the end of the history...
well, the problem was related to the traffic shaping of the packeteer
nothing was wrong in DSpace or in the server configuration.
Hope this could help someone in future,
Andrea

Tim Donohue ha scritto:
> Andrea,
>
> I've never seen this particular error before, to be honest.  However, I 
> do recall seeing similar (usually random) issues when uploading larger 
> files across an unstable (or bogged down) wireless network.
>
> The "Stream ended unexpectedly" error looks almost like the upload is 
> timing out (does the browser just hang for a while after uploading?) or 
> somehow being interrupted.  But it's hard to say what could be causing 
> this -- especially from just a single machine.  If it's only happening 
> from one machine it seems like that machine's network connection could 
> be having problems (though it sounds like you've already started looking 
> into that).
>
> Anyone else encounter this with regularity?  Or have any ideas?
>
> - Tim
>
> On 1/28/2010 9:19 AM, Andrea Bollini wrote:
>   
>> Hi all,
>> we are experience a lot of errors uploading files from a specific
>> workstation. From this workstation with all the browser available
>> (firefox, IE, Opera) it is impossible complete an upload.
>> We always get the following exception:
>>
>> 
>>> Exception:
>>> java.io.IOException: Processing of multipart/form-data request failed.
Stream ended unexpectedly
>>> at
org.dspace.app.webui.util.FileUploadRequest.(FileUploadRequest.java:13
9)
>>> at
org.dspace.app.webui.servlet.SubmissionController.wrapMultipartRequest(Submi
ssionController.java:1405)
>>> at
org.dspace.app.webui.servlet.SubmissionController.doDSPost(SubmissionControl
ler.java:255)
>>> at
org.dspace.app.webui.servlet.DSpaceServlet.processRequest(DSpaceServlet.java
:147)
>>>   
>> The error occurs with files of any size, and from other workstations we
don't see any problem.
>> Apparently, we can't check this directly, there is no firewall, proxy or
network limit/special configuration between the client and the DSpace server
(1.5.2)...
>>
>> Any idea/previous experience with this issue? do you have any suggestion
about test that could help to collect more information?
>> Thanks,
>> Andrea
>>
>>
>> 
>
>

--
> The P

Re: [Dspace-tech] Bad robot! Googlebot and Internal Server Errors

[Joseph Greene]

Are you sure you want to disallow Google from crawling your browse-titles or
your entire repository? I like being able to find our items on Google.

Move your robots.txt like this (sorry if this is duh-obvious but I had that
moment myself a few months back so no worries!):

# cp [tomcat]/webapps/dspace/robots.txt [tomcat]/ROOT/robots.txt

I've been getting a similar one, related to collection pages' handles

-- URL Was: http://irserver.ucd.ie/dspace/browse-title?top=10197/853
-- Method: GET
-- Parameters were:
-- top: "10197/853"

Bad robot indeed!

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/

Message: 1
Date: Thu, 11 Feb 2010 12:30:04 +
From: Michael White 
Subject: [Dspace-tech] Bad robot! Googlebot and Internal Server Errors
To: "dspace-tech@lists.sourceforge.net"

Message-ID:
<7c43cb6f3460394f9b5236c0f68d7b6a5d6baa4...@exch2007.ad.stir.ac.uk>
Content-Type: text/plain; charset="us-ascii"

Hi,

Our DSpace (v1.4.1) has recently started logging a lot of Internal Server
Errors that appear to be being caused by a Googlebot. They appear to be
happening like clockwork every 14 minutes and come in blocks (sometimes
lasting several hours).

They are all associated with the IP Address 66.249.71.176, which, when
looked up, appears to be "crawl-66-249-71-176.googlebot.com". The errors all
have the form:


2010-02-11 11:34:07,739 WARN
org.dspace.app.webui.servlet.InternalErrorServlet @
:session_id=9E40BFD899A2AA5C23E81404AF5B97A5:internal_error:-- URL Was:
https://dspace.stir.ac.uk/dspace/browse-title?bottom=1893/214
-- Method: GET
-- Parameters were:
-- bottom: "1893/214"

java.lang.ClassCastException
at
org.dspace.app.webui.servlet.BrowseServlet.doDSGet(BrowseServlet.java:282)
at
org.dspace.app.webui.servlet.DSpaceServlet.processRequest(DSpaceServlet.java
:151)
at
org.dspace.app.webui.servlet.DSpaceServlet.doGet(DSpaceServlet.java:99)
==

I have checked our robots.txt file (from /usr/src/dspace-1.4.1-source/jsp),
which contains:


User-agent: *

Disallow: /browse-author
Disallow: /items-by-author
Disallow: /browse-date
Disallow: /browse-subject


I'm not that familiar with robots.txt, but I surmise that adding:

Disallow:/browse-title

- might do the trick? However, on further investigation, it appears that the
googlebot is not obeying any of the rules as it appears that it is accessing
other "Disallow"ed browse interfaces - I see a lot of this kind of thing in
the DSpace logs:

2010-02-11 02:09:16,746 INFO  org.dspace.app.webui.servlet.BrowseServlet @
anonymous:session_id=FBC689A1F89C3B962F0D9BFEC0B4D8ED:ip_addr=66.249.71.176:
browse_author:starts_with=Farkas, Jozsef Z.,results=21

- and mapping this to the Tomcat logs:

66.249.71.176 - - [11/Feb/2010:02:09:16 +] "GET
/dspace/browse-author?starts_with=Farkas%2C+Jozsef+Z. HTTP/1.1" 200 16836


So, 2 (related?) issues here - googlebot is causing errors when it is
crawling the site, and it also appears to me that the googlebot is not
obeying the robots.txt file at all :-( - or am I misunderstanding anything?

Given that this has only just started happening (we have had no trouble with
bots or spiders in the past), I was wondering if anyone else had noticed
anything like this related to the googlebot, or if anyone was aware of
anything that may have changed to cause this to start happening?

More importantly, rather than me randomly trying things, any bot/robots.txt
experts out there able to tell me how I can stop this but still allow
legitimate crawling of the site for indexing purposes?

Cheers,

Mike

Michael White
eLearning Developer
Centre for eLearning Development (CeLD) 3V3a, Cottrell University of
Stirling Stirling SCOTLAND
FK9 4LA
Email: michael.wh...@stir.ac.uk
Tel: +44 (0) 1786 466877
Fax: +44 (0) 1786 466880
http://www.is.stir.ac.uk/celd/


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Re: [Dspace-tech] Dspace Minho add-on using reasing resources heavily when removing spiders

[Joseph Greene]

Hello Peter,
I run the remove_spiders script once every 3-5 days. My server access logs
are written as daily logs; running the script on one 'day' of logs takes 3-4
minutes, Java @ 100% CPU, postmaster @ 20% CPU, though low on memory usage.
Never tried to improve this at all. Could be put into a cron job at low
usage times but of course you may prefer/have to do the second step
manually.

Hope this is of some help.
Best regards,
 
Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/


-Original Message-
From: dspace-tech-requ...@lists.sourceforge.net
[mailto:dspace-tech-requ...@lists.sourceforge.net] 
Sent: 10 February 2010 09:46
To: dspace-tech@lists.sourceforge.net
Subject: DSpace-tech Digest, Vol 46, Issue 22


Message: 5
Date: Wed, 10 Feb 2010 10:33:20 +0100
From: "Peter van Wonderen" 
Subject: [Dspace-tech] Dspace Minho add-on using reasing resources
heavily when removing spiders
To: 
Message-ID:
<436ebe781aa8e345b54c13c393879875020de...@dizzy.ubvu.vu.nl>
Content-Type: text/plain; charset="us-ascii"

Is anyone of you using the Minho statistics add-on? And do you have
experience running the org.dspace.stats.util.Spiders script?

It is using a lot of processor resources. And it takes quite a long time
to remove records especially from the stats.view table.

 

Do you have the same experience? Or might this require better tuning of
our Linux server? I would appreciate if you could share your experience
with me.

 

Kind regards,

 

Peter van Wonderen

 

Vrije Universiteit

University Library

De Boelelaan 1105

1082 HV Amsterdam

The Netherlands

+31-20-5985112

 

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[Dspace-tech] Dspace search indexes

[Joseph Greene]

I've had a few queries recently about DSpace not being able to find items.
I've re-indexed and restarted DSpace but to no avail. Have others
experienced this?

Example:

Search (any: or title:) for

'dashboard' 
'extensible'

Will not find item
http://hdl.handle.net/10197/1293


Another example

http://hdl.handle.net/10197/1137

'prerequisite'


Any ideas why this may be happening/ how to fix? Using DSpace 1.4.2.


Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/




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[Dspace-tech] Moving to Fedora?

[Joseph Greene]

Hello all,

Maybe not the best place to post this query in terms of Brand Loyalty, but I
wonder has anyone successfully moved their repository from DSpace to Fedora,
or know of successful moves to Fedora? The big questions I'm interested in
knowing more about include:

How you moved the objects and their metadata (and which metadata)
How you built the workflow system
How you built the public user interface

Of course at the end of the day the answer may be to wait for this to happen
on its own, given the eventual merge of the DSpace and Fedora software, but
there must be someone out there who's done it already! I would be most
grateful for any information you would be willing to share.

Kind regards,

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/


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[Dspace-tech] Subject repositories conference in London - 28/29 January 2010

[Joseph Greene]

Please find below details on a first ever event of its kind.

 

The EU funded Economists Online portal is an open access research database/
search interface and OAI-PMH harvester, aggregating MODS/DIDL
bibliographic/structural metadata from repositories in 22 participating
institutions.

 

http://www.neeoconference.eu/

 

http://www.nereus4economics.info/

http://www.neeoproject.eu/

 

Nereus Partners:

London School of Economics (UK)

Tilburg University (NL)

Erasmus University Rotterdam (NL)

ZBW - German National Library of Economics (D)

Sciences Po, Paris (F)

Université Libre de Bruxelles (ULB) (B)

UCD Dublin (IRL)

UCL (University College London) (UK)

University of Oxford (UK)

University of Warwick (UK)

Katholieke Universiteit Leuven (B)

Vienna University of Economics and Business Administration (A)

Maastricht Univeristy (NL)

Universidad Carlos III de Madrid (ES)

Charles University, CERGE-EI (CZ)

Université Toulouse 1 Sciences Sociales (F)

Université Paris-Dauphine (F)

Monash University (AUS)

University of Geneva (CH)

Universität Konstanz (D)

European University Institute

Columbia University (USA)

 



 

Dear colleagues,

 

With apologies for cross-posting, I would like to draw your attention to the
following conference to take place on 28 and 29 January 2010 at the British
Library Conference Centre.

 

The conference is organised by Nereus, the European economics library
consortium of which I am chair ( http://www.nereus4economics.info) and the
aims of the event are twofold:

 

1.  To disseminate the outcomes and lessons learned of Nereus's 2.5 year
EC-funded project, NEEO, which is building a single multi-lingual portal
called Economists Online to the economics content contained in the
institutional repositories of Nereus member libraries.
(http://www.neeoproject.eu) The project funding finishes in March 2010 and
at this time has well over 20,000 full-text economics research articles and
counting.

 

2.  To discuss progress with subject repositories in Europe, the USA and
Australia.  For this we have a clutch of international speakers.

 

Detailed information about the conference is as follows:

 

 

"A major international conference will be taking place at the British
Library Conference Centre in London on 28-29 January 2010:

 

Subject repositories: European collaboration in the international context

 

The conference, the first of its kind, will explore the development of
subject repositories worldwide and will see the launch of Economists Online,
the key output of an EC-funded subject repository project managed by the
Nereus consortium of top European economics libraries.  Nereus members will
showcase this subject repository in both plenary and parallel sessions,
sharing lessons learned and engaging delegates in discussions of the main
issues such as content recruitment, search and retrieval services, usage
statistics and data sets.  The two-day programme will also put Economists
Online into the wider context and will allow delegates to hear about
repository trends across three continents.

 

Among the speakers are Chuck Henry, President of the Council on Library and
Information Resources, Clifford Lynch, Director of the Coalition for
Networked Information, Cathrine Harboe-Ree, University Librarian at Monash
University, who led the ARROW project and is involved in leading the ANDS
project, and Christian Zimmerman, Economics professor at the University of
Connecticut.  Professor Nick Barr of the London School of Economics will
launch the Economists Online portal.

 

The delegate fee is £155 and includes attendance at plenary and parallel
sessions, refreshments during breaks, two lunches and VAT.  For further
information on how to book, speakers, travel information and hotels, please
visit http://www.neeoconference.eu

Please book soon to avoid disappointment!”

 

 

The conference will be of interest to library directors, repository
managers, publishers and economists.  I would be very grateful if you could
take a look at the conference website and disseminate it within your library
and your institution as appropriate. I hope that some of you may decide to
attend yourselves.

 

Many thanks in advance for helping Nereus to disseminate information about
the conference.

 

Best wishes

 

Jean Sykes

Chief Information Officer

London School of Economics and Political Science 10 Portugal Street 

London WC2A 2HD Tel 020 7955 7218 Fax 020 7955 7454 Email 

j.sy...@lse.ac.uk

 

 

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DSpace-tech

Re: [Dspace-tech] U. Minho Stats package error

[Joseph Greene]

Hello Daniel,

That did the trick. I just did as you said by dropping the 6 tables and
re-creating them with longer character restrictions.

Not sure but  I think it may have related to the dc.rights field, which
seems to be collected by the stats package to show items accessed by 'access
type', but in our case we use the dc.rights field to record copyright
information, so naturally it wasn't what the system was expecting. I'm not
too concerned that this stat doesn't work, the system simply doesn't display
it.

You've saved me countless hours, thanks again.

Joseph

(Anyone interested can view UCD's statistics at
http://irserver.ucd.ie/dspace/stats -- I'm working on opening up a few more
to the public this afternoon. Brilliant work from University of Minho team!)


-Original Message-
From: Daniel Ishimitsu [mailto:danie...@hawaii.edu] 
Sent: 28 August 2009 00:46
To: joseph.gre...@ucd.ie
Cc: repositor...@sdum.uminho.pt; dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] U. Minho Stats package error

Hi Joseph,

Minho stats copies some values of metadata into its own tables for 
indexing. In DSpace the length is unlimited, but minho has a cap of 200 
chars, so it gives an error when copying if your DSpace metadata is 
bigger than 200 chars.  Expanding the "field_value" column in the 
following tables should fix the error when aggregating (we set ours to 
2000 chars but that's probably overkill):

stats.view_metadata_month
stats.view_metadata_coll_month
stats.view_metadata_comm_month

stats.download_metadata_month
stats.download_metadata_coll_month
stats.download_metadata_comm_month

If you use non-standard metadata fields you may also want to check that 
it's indexing the correct fields. I think by default it does 
date.issued, title, and contributor.author. But if you've moved/edited 
fields it may be looking in the wrong place. You can see the list of 
fields it's indexing via running this db query.

select * from metadatafieldregistry where metadata_field_id in (select 
metadata_field_id from stats.metadata_aggreg);

Hope that helps,

Daniel Ishimitsu

University of Hawaii
Hamilton Library, DNS



> Date: Wed, 26 Aug 2009 16:47:30 +0100
> From: joseph greene 
> Subject: [Dspace-tech] U. Minho Stats package error
> To: dspace-tech@lists.sourceforge.net
> Cc: repositor...@sdum.uminho.pt
> Message-ID: 
> Content-Type: text/plain; charset="iso-8859-1"
>
> Has anyone encountered the following error when trying to run the
stats.aggregate(); script of the U. Minho Stats package? I'm on DSpace
1.4.2, stats-addon-2.0, though I think it may be the same code as 2.1. I
would really appreciate the help-- I've gotten it to work this far, would
love for the whole thing to be working. I'm up to my ears in the code trying
to trace it back, but this pgsql procedural language is new to me.
>
> Here's the error:
>
> select stats.aggregate();
> ERROR:? value too long for type character varying(200)
> CONTEXT:? SQL statement "INSERT INTO stats.view_metadata_month (field_id,
field_value, yearmo
> nth,year,value) values ( $1 ,? $2 , stats.getyearmonth( $3 ::date),
date_part('year', $4 )::i
> nteger,? $5 )"
> ??? PL/pgSQL function "aggregate_view" line 211 at SQL statement
> ??? PL/pgSQL function "aggregate" line 11 at assignment
> STATEMENT:? select stats.aggregate();
> ERROR:? value too long for type character varying(200)
> CONTEXT:? SQL statement "INSERT INTO stats.view_metadata_month (field_id,
field_value, yearmonth,year,value) values ( $1 ,? $2 , stats.getyearmonth(
$3 ::date), date_part('year', $4 )::integer,? $5 )"
> PL/pgSQL function "aggregate_view" line 211 at SQL statement
> PL/pgSQL function "aggregate" line 11 at assignment
>
> Many thanks,
>
> Joseph Greene
> Institutional Repository Project Manager
> 325 James Joyce Library
> University College Dublin
> Belfield, Dublin 4
>
> 353 (0)1 716 7398
> joseph.gre...@ucd.ie
> http://irserver.ucd.ie/dspace/
>
>
>   


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[Dspace-tech] U. Minho Stats package error

[joseph greene]

Has anyone encountered the following error when trying to run the 
stats.aggregate(); script of the U. Minho Stats package? I'm on DSpace 1.4.2, 
stats-addon-2.0, though I think it may be the same code as 2.1. I would really 
appreciate the help-- I've gotten it to work this far, would love for the whole 
thing to be working. I'm up to my ears in the code trying to trace it back, but 
this pgsql procedural language is new to me.

Here's the error:

select stats.aggregate();
ERROR:  value too long for type character varying(200)
CONTEXT:  SQL statement "INSERT INTO stats.view_metadata_month (field_id, 
field_value, yearmo
nth,year,value) values ( $1 ,  $2 , stats.getyearmonth( $3 ::date), 
date_part('year', $4 )::i
nteger,  $5 )"
    PL/pgSQL function "aggregate_view" line 211 at SQL statement
    PL/pgSQL function "aggregate" line 11 at assignment
STATEMENT:  select stats.aggregate();
ERROR:  value too long for type character varying(200)
CONTEXT:  SQL statement "INSERT INTO stats.view_metadata_month (field_id, 
field_value, yearmonth,year,value) values ( $1 ,  $2 , stats.getyearmonth( $3 
::date), date_part('year', $4 )::integer,  $5 )"
PL/pgSQL function "aggregate_view" line 211 at SQL statement
PL/pgSQL function "aggregate" line 11 at assignment

Many thanks,

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/



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[Dspace-tech] OAI-PMH for non-full text

[Joseph Greene]

Hello,
I need to create a crosswalk that will, among other things, filter out my
non-full text resources. I can easily do this based on the metadata, but how
would I cause the system to not output a record? I was thinking that maybe
there is a way into 'tricking' it into to thinking that it is a withdrawn
item if full text is unavailable. 

Does the OAIDCCrosswalk.java for example pass any type of parameter up to
another class that I could set in an 'if' statement that would cause the
RecordFactory (or relevant class) to ignore the record?

Thanks for any tips.


Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/


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[Dspace-tech] Sorting items in task pools

[Joseph Greene]

Hello all,

I wonder has anyone ever considered sorting task pool items, eg
alphabetically by collection so that items can be claimed by relevant
cataloguer, or prioritised by project.

I'm on 1.4.2 and in the [source]/src/org/dspace/workflow directory, looking
at WorkflowItem.java et. al; this is probably a basic Java question on
sorting an array, just not sure which is the right array to sort, nor how to
sort them for that matter.

Any pointers?

All the best,

Joseph

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/



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[Dspace-tech] Dspace workflow code

[Joseph Greene]

Hello, 
Just wondering if anyone has ever written code to sort items in the task
pool, eg sort by collection? Version 1.4.2?

Many thanks,

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/


-Original Message-
From: dspace-tech-requ...@lists.sourceforge.net
[mailto:dspace-tech-requ...@lists.sourceforge.net] 
Sent: 10 June 2009 09:17
To: dspace-tech@lists.sourceforge.net
Subject: DSpace-tech Digest, Vol 38, Issue 21

Send DSpace-tech mailing list submissions to
dspace-tech@lists.sourceforge.net

To subscribe or unsubscribe via the World Wide Web, visit
https://lists.sourceforge.net/lists/listinfo/dspace-tech
or, via email, send a message with subject or body 'help' to
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You can reach the person managing the list at
dspace-tech-ow...@lists.sourceforge.net

When replying, please edit your Subject line so it is more specific
than "Re: Contents of DSpace-tech digest..."


Today's Topics:

   1. Re: Strange Behaviour when exporting items andcollections
  (Kim Shepherd)
   2. Re: Producing mets.xml for SWORD (Scott Yeadon)
   3. How to add thumbnail preview for all items in one collection
  in xmlui & how to add video preview for xmlui. (Yureshwar Dspace)
   4. Re: Strange Behaviour when exporting items and collections
  (Manuel Martin Mohedano)


--

Message: 1
Date: Wed, 10 Jun 2009 10:02:30 +1200
From: "Kim Shepherd" 
Subject: Re: [Dspace-tech] Strange Behaviour when exporting items and
collections
To: "Manuel Martin Mohedano" ,

Message-ID:
<12154bd7a5a6d84f9e96aaa8899e8384010cf...@ex1.its.waikato.ac.nz>
Content-Type: text/plain; charset="utf-8"

Hi Manuel,

 

I?m assuming that you?re exporting from the CLI here, but if that?s not the
case please say so..

Do you use ?sudo? when running dsrun? (I?m guessing so, or you wouldn?t be
able to create the files beneath the exports folder if it?s owned by root).
If so, you?re effectively running the ?dsrun? command as root unless you do
something like ?sudo ?u tomcat dsrun org.dspace.app..? or ?sudo ?u
dspace dsrun ...? ? the username you pass to sudo should be whatever
user dspace is actually running as.

 

If you get sudo errors when you try this, you may need to ask the sysadmin
to allow you to sudo ?dsrun? as your dspace user as well as (or, preferably,
instead of!) root. You?ll also want them to change ownership of
[dspace]/export/* to the dspace user, or you won?t be able to write to it.

 

There?s no need to be concerned about Dspace itself escalating privileges to
root when it shouldn?t be ? the dsrun script will run as whatever user it
thinks is running it (?effective user?), so if you make sure you can sudo to
the dspace/tomcat user rather than just to root, you should be able to avoid
any root-owned files/dirs being created.

 

If you?re using the webui or I?m totally barking up the wrong tree,
apologies -- maybe give a few more details about how you?re exporting
items/collections.

 

Cheers,

 

Kim

--

Kim Shepherd

IRR Technical Specialist

ITS Systems & Development

The University of Waikato

New Zealand

 

DDI +64 7 838 4025

 

 

 

From: Manuel Martin Mohedano [mailto:manumohed...@hotmail.com] 
Sent: Tuesday, 9 June 2009 7:59 p.m.
To: dspace-tech@lists.sourceforge.net
Subject: [Dspace-tech] Strange Behaviour when exporting items and
collections

 

Hi all.

I was doing some exporting tests with communities and items yesterday and
there was a thing that surprised me. Exported files are stored in a folder
on server called exports/downloads/number. The thing is the owner of this
folder is the root of the system but I don't have any root account on the
machine. How is this possible?? Can Dspace run processes as root??

Thank's  and regards.



Charlas m?s divertidas con el nuevo Windows Live Messenger
<http://download.live.com> 

-- next part --
An HTML attachment was scrubbed...

--

Message: 2
Date: Wed, 10 Jun 2009 08:24:52 +1000
From: Scott Yeadon 
Subject: Re: [Dspace-tech] Producing mets.xml for SWORD
To: mikan.dsp...@gmail.com
Cc: DSpace Tech , Larry Stone

Message-ID: <0kkz00mojsxgp...@messaging1.anu.edu.au>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Mika,

You may also want to try out the METS Java API (or other tools) available at
http://www.loc.gov/standards/mets/mets-tools.html to see what suits you
best.

Scott.


Date: Fri, 5 Jun 2009 14:37:33 -0400
From: Larry Stone 
Subject: Re: [Dspace-tech] Producing mets.xml for SWORD
To: "mikan.d.dspace listmail" 
Cc: Dspace Tech 
Message-ID: 
Con

[Dspace-tech] Browse by author is very slow, v. 1.4.2

[Joseph Greene]

Hello,

My browse-by-author is going very slowly. I'm on version 1.4.2. Does anyone
have that fixed? Can't seem to find anything in the archive other than
rumours of memory leaks. Any pointers?

Many thanks,

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/



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[Dspace-tech] Support for rendering DOI links

[Joseph Greene]

Hello,
I just came across a patch to make DOIs render as hyperlinks, issue key
DS-47 (http://jira.dspace.org/jira/browse/DS-47) but I can't seem to find
the patch for 1.4.2 though the documentation states that it is supplied--
does anyone know where I might find that?

Many thanks,
Joseph

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
joseph.gre...@ucd.ie
http://irserver.ucd.ie/dspace/


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Re: [Dspace-tech] visibility-bug.txt

[Joseph Greene]

Hi Stuart,

I Just went through it again, I realise I forgot to do 'ant clean' before
'ant update', which has solved the problem. Mea culpa!

Thanks,
Joseph


-Original Message-
From: Stuart Lewis [mailto:s...@aber.ac.uk] 
Sent: 27 January 2009 07:17
To: Joseph Greene; dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] visibility-bug.txt

Hi Joseph,

> Using DSpace 1.4.2, I'm trying to edit my input-forms.xml file but I'm
> getting an exception when adding
> 
> workflow

What exception are you getting, and when are you getting it?

If there is an error in your input forms, it will typically throw the error
right at the start of the submission. If it is thrown later, then it is a
code error.

Thanks,


Stuart
_

Gwasanaethau Gwybodaeth  Information Services
Prifysgol Aberystwyth  Aberystwyth University

E-bost / E-mail: stuart.le...@aber.ac.uk
 Ffon / Tel: (01970) 622860
_



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[Dspace-tech] visibility-bug.txt

[Joseph Greene]

Hello,

Using DSpace 1.4.2, I'm trying to edit my input-forms.xml file but I'm
getting an exception when adding 

workflow

It looks like the bug mentioned in - 'SF Patch #1670110 for SF Bug #1670106
Onebox and textarea fail when visibility set to workflow'

I've tried applying the patch with no success -- any pointers? Perhaps there
is an error in my input-forms.xml?

Joseph


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Re: [Dspace-tech] Running multiple instances of DSpace on 1 machine

[Joseph Greene]

Thanks Robin, that did the trick.

Best regards,

Joseph

 

 

Joseph Greene

Institutional Repository Project Manager

325 James Joyce Library

University College Dublin

Belfield, Dublin 4

 

353 (0)1 716 7398

[EMAIL PROTECTED]

http://irserver.ucd.ie/dspace/

 

 

-Original Message-

From: Robin Taylor [mailto:[EMAIL PROTECTED]

Sent: 14 November 2008 11:21

To: Joseph Greene

Subject: RE: [Dspace-tech] Running multiple instances of DSpace on 1 machine

 

 

'Alternatively you may not be using the correct dspace.cfg. You should have
2 directories, one for each Dspace. They contain amongst other things the
config directory which contains dspace.cfg. It may be that both your web
applications are pointing to the same dspace directories ie the one for
dspace1. Have a look in the deployed application, that is to say, look
tomcat/webapps/dspace1 and dspace2 and then look for a directory called
WEB-INF. In there you will find a file called web.xml. That file contains
the only reference to the Dspace directory. So if its pointing to the
dspace1 directory then that is the problem.'

 

Robin Taylor [EMAIL PROTECTED]

 

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[Dspace-tech] Running multiple instances of DSpace on 1 machine

[Joseph Greene]

Hi all,

I'm trying to build a test and dev server on one machine, v 1.4.2 and cannot
for the life of me get 'dspace2' to point to the correct database. At the
moment I have 1 postgres instance but 2 tomcats (I'm not worried about
resource usage).

I have the 2 tomcats on different ports and I've modified dspace.cfg to
reflect that. I've set different pg username and passwords for each dspace
instance. Any clues?

Many thanks,
Joseph


Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
[EMAIL PROTECTED]
http://irserver.ucd.ie/dspace/


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Re: [Dspace-tech] DSpace-tech, How drop items from community

[Joseph Greene]

Hi Miguel,

Was just looking to do this myself. Try this:

http://stevethomas.blogspot.com/2006/07/dspace-howto-move-item-to-different.
html
Accessed 2008-09-22
Written 2006-07-25




Date: Tue, 21 Oct 2008 09:32:55 -0300
From: "Miguel Pizarro" <[EMAIL PROTECTED]>
Subject: [Dspace-tech] How drop items from community
To: 
Message-ID: <[EMAIL PROTECTED]>
Content-Type: text/plain; charset="iso-8859-1"

Dear friends:

 

I need drop ?tems from the community, and reload into other community, can
you help me?

 

Best regards,

 

Miguel Pizarro

Soporte Tecnol?gico

Alerta al Conocimiento

Santiago, Chile.


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Re: [Dspace-tech] DSpace-tech Digest, Vol 30, Issue 16

[Joseph Greene]

Thanks Claudia,
I should have mentioned that no 20?? dates appear in the
metadatavalue.text_value field, so I'm wondering where they went -- has
something happened in the transfer from input to database, or is that normal
behaviour? We are using DSpace 1.4.2.

-Original Message-
From: Claudia Jürgen [mailto:[EMAIL PROTECTED] 
Sent: 07 October 2008 15:54
To: Joseph Greene
Cc: dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] DSpace-tech Digest, Vol 30, Issue 16

Hi Joseph,

the date will be stored in the mangled form. So if you got an item with 
dc.date.issued= 20?? imported or created a mangled date via editing an 
item, it will lead to some problems
- it will not be displayed properly in default item display
- it will not appear in browse lists
and so on.

At the moment there is no metadata type to represent "fuzzy" dates, or 
something like 123 b.c ... For the time being it might be best to create 
an own metadata field for it and not use it as date type.

Hope that helps

Claudia Jürgen


Joseph Greene schrieb:
> Hello all,
> 
> I'm reviewing our metadata input and would like to know if anyone knows
what
> happens to 'mangled dates'? We had been putting years in like 20?? When
> unsure of the exact publication date and I've found the following in the
> logs:
> 
> 2008-07-31 12:26:53,293 WARN  org.dspace.content.DCDate @ Mangled date:
20??
> Exception: java.lang.NumberFormatException: For input string: "20??"
> 
> How does DSpace handle this error-- what happens to the date?
> What do others do to represent unknown dates?
> 
> Many thanks,
> 
> Joseph Greene
> Institutional Repository Project Manager
> 325 James Joyce Library
> University College Dublin
> Belfield, Dublin 4
> 
> 353 (0)1 716 7398
> [EMAIL PROTECTED]
> http://irserver.ucd.ie/dspace/
> 
> 
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Re: [Dspace-tech] DSpace-tech Digest, Vol 30, Issue 16

[Joseph Greene]

Hello all,

I'm reviewing our metadata input and would like to know if anyone knows what
happens to 'mangled dates'? We had been putting years in like 20?? When
unsure of the exact publication date and I've found the following in the
logs:

2008-07-31 12:26:53,293 WARN  org.dspace.content.DCDate @ Mangled date: 20??
Exception: java.lang.NumberFormatException: For input string: "20??"

How does DSpace handle this error-- what happens to the date?
What do others do to represent unknown dates?

Many thanks,

Joseph Greene
Institutional Repository Project Manager
325 James Joyce Library
University College Dublin
Belfield, Dublin 4

353 (0)1 716 7398
[EMAIL PROTECTED]
http://irserver.ucd.ie/dspace/


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