[agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Am I right in thinking that what these people: http://www.newscientist.com/article/mg20026845.000-memories-may-be-stored-on-your-dna.html are saying is that memories can be stored as changes in the DNA inside neurons? If so, that would upset a few apple carts. Would it mean that memories

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
Note also, http://sciencelinks.jp/j-east/article/200308/20030803A0129895.php Jean Baptiste de Lamarck (1744-1829) maintained that characteristics that were acquired during an organism's lifetime are passed on to its offspring. This theory, known as Lamarckian inheritance, was later

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Harry Chesley
On 12/3/2008 8:11 AM, Richard Loosemore wrote: Am I right in thinking that what these people: http://www.newscientist.com/article/mg20026845.000-memories-may-be-stored-on-your-dna.html are saying is that memories can be stored as changes in the DNA inside neurons? If so, that would

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ed Porter
Richard, The role played by the epigenome in genetics actually does have a slightly Lamarckian tinge. Nova had a show saying that when identical twins are born their epigenomes are very similar, but that as they age their epigenomes start to differ more an more, and that certain behaviors like

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Interesting. Note, however, that it is conceivable that those other examples of plant and bacterial adaptation could be explained as situation-specific - in the sense that the particular cause of the adaptation could have worked in ways that were not generalizable to other, similar factors.

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Harry Chesley wrote: On 12/3/2008 8:11 AM, Richard Loosemore wrote: Am I right in thinking that what these people: http://www.newscientist.com/article/mg20026845.000-memories-may-be-stored-on-your-dna.html are saying is that memories can be stored as changes in the DNA inside neurons?

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
Implication for neuroscientists proposing to build a WBE (whole brain emulation): the resolution you need may now have to include all the DNA in every neuron. Any bets on when they will have the resolution to do that? No bets here. But they are proposing that elements are added onto

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Philip Hunt
2008/12/3 Richard Loosemore [EMAIL PROTECTED]: http://www.newscientist.com/article/mg20026845.000-memories-may-be-stored-on-your-dna.html are saying is that memories can be stored as changes in the DNA inside neurons? No. They are saying memories might be stored as changes *on* the DNA.

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
Hi Richard, Thanks for the link, pretty intriguing. It's important to note that the mechanism proposed is just a switch that turns specific genes off... so properly understood, it's likely that the resolution required to model this mechanism would not necessarily require modeling the entire

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Philip Hunt
2008/12/3 Richard Loosemore [EMAIL PROTECTED]: Implication for neuroscientists proposing to build a WBE (whole brain emulation): the resolution you need may now have to include all the DNA in every neuron. Any bets on when they will have the resolution to do that? No bets here. But

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
Ed, That's a good point about synapses, but perhaps the methylation just affects the neuron's output, e.g., the targeted genes express proteins that only find a functional role in the axon. Terren --- On Wed, 12/3/08, Ed Porter [EMAIL PROTECTED] wrote: Richard, The role played by the

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Philip Hunt wrote: 2008/12/3 Richard Loosemore [EMAIL PROTECTED]: http://www.newscientist.com/article/mg20026845.000-memories-may-be-stored-on-your-dna.html are saying is that memories can be stored as changes in the DNA inside neurons? No. They are saying memories might be stored as changes

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Terren Suydam wrote: Hi Richard, Thanks for the link, pretty intriguing. It's important to note that the mechanism proposed is just a switch that turns specific genes off... so properly understood, it's likely that the resolution required to model this mechanism would not necessarily require

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ed Porter
I don' really see how a change in gene expression in the nucleus of a neuron caused by methylation could store long term memories, since most neural network models store all most all their information in the location and differentiation of they synapses. How is information in a neural net stored

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
I definitely agree that getting from there to a situation in which packages of information are being inserted into germ cell DNA is a long road, but this one new piece of research has - surprisingly - just cut the length of that road in half. Half of infinity is still infinity ;-] It's just

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Terren Suydam wrote: I definitely agree that getting from there to a situation in which packages of information are being inserted into germ cell DNA is a long road, but this one new piece of research has - surprisingly - just cut the length of that road in half. Half of infinity is still

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
Ed, Though it seems obvious that synapses are *involved* with memory storage, it's not proven that synapses individually *store* memories. Clearly memory is distributed, as evidenced by brain injury studies (a situation that led Karl Pribram/David Bohm to propose a holographic storage

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
Ed, you seem to be taking the memory as synaptic weight modification model a bit too seriously ... it's really just a simplified formal model that captures a certain percentage of what goes on in the brain (and no one knows how much) This is why I shy away from brain-modeling approaches to AGI

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
Does it work? Assuming that the encodings between parent and child are compatible, it could work. But you'd still be limited to the total amount of information storage allowable in the junk DNA (which would necessarily be a miniscule fraction of the total information stored in the brain as

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
I know you're just playing here but it would be easy to empirically test this. Does junk DNA change between birth and death? Something tells me we would have discovered something that significant a long time ago. Terren well, loads of mutations occur in nuclear DNA between birth and

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Richard Loosemore
Ben Goertzel wrote: I know you're just playing here but it would be easy to empirically test this. Does junk DNA change between birth and death? Something tells me we would have discovered something that significant a long time ago. Terren well, loads of mutations occur in nuclear DNA

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
On Wed, Dec 3, 2008 at 3:19 PM, Ed Porter [EMAIL PROTECTED] wrote: Terry and Ben, I never implied anything that could be considered a memory at a conscious level is stored at just one synapse, but all the discussions I have heard of learning in various brain science books and lectures imply

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ed Porter
Terry and Ben, I never implied anything that could be considered a memory at a conscious level is stored at just one synapse, but all the discussions I have heard of learning in various brain science books and lectures imply synaptic weights are the main place of our memories are stored.

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ed Porter
Richard, You asked can the state of the switches be preserved during reproduction? According to the Nova show I saw about epigenome, they were able to induce a change in a mouse's epigenome that changed its appearance, then its children would be more likely to inherit the same changed

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
Possibly... it has been shown with methylation. But I think the mechanism you're proposing could not involve methylation because (someone can correct me if wrong) methylation is only applicable to coding regions (methyl group only added to specific DNA sequences that mark the gene). That's not

Re: [agi] Seeking CYC critiques

2008-12-03 Thread Steve Richfield
Steve, Based on your attached response, How about this alternative approach: Send (one of) them an email pointing out http://www.dreliza.com/standards.php which will obviously usurp their own efforts if they fail to participate, and offer them an opportunity to suggest amendments these standards

Re: [agi] Seeking CYC critiques

2008-12-03 Thread Ben Goertzel
Steve, Frankly, I find it rather unlikely that Cyc would consider it obvious that your project will usurp their own efforts if they fail to participate. Two points 1) it's not as though you have any really awesome demonstrated results with Dr. Eliza, that would compel them 2) even if you did,

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
Junk DNA doesn't code for protein, but it seems to carry out various control functions over the protein synthesis and interaction processes, no? ben g On Wed, Dec 3, 2008 at 4:02 PM, Terren Suydam [EMAIL PROTECTED] wrote: Possibly... it has been shown with methylation. But I think the

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ed Porter
Ben, I basically agree. There many things going in the human brain. There are all the different neuro- chemicals, receptors, and blockers, some of which are not only effective across individual synapses, but often across broader distances. There is the fact that neuron branches can

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
http://en.wikipedia.org/wiki/Epigenetic_inheritance#DNA_methylation_and_chromatin_remodeling The DNA sites where methylation can occur are rare, except in the regions where gene transcription occurs... which generally supports what I was saying about coding regions. However it is certainly

RE: [agi] Lamarck Lives!(?)

2008-12-03 Thread Terren Suydam
I think the key is to see the gene switching not as an information store per se but as part of a larger dynamic process (which might be similar in principle to simulated annealing), in which the contributions of whole neurons (e.g., the outputs) are switched in some way meaningful to the

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
Yes. Ed etc., what comes to mind is Eugene Ishikevich (sp?) 's nonlinear dynamics models of fast and slow dynamics in neurons, which are based on ion channel models similar to (but more sophisticated in some cases than) the classic Hodgkin-Huxley equations Potentially the gene switching under

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Matt Mahoney
http://www.newscientist.com/article/mg20026845.000-memories-may-be-stored-on-your-dna.html Actually, this makes sense. It explains most of the discrepancy between the 10^9 bits of human long term memory estimated by Landauer and the 10^15 synapses in the human brain. If memory is stored in

Re: [agi] Lamarck Lives!(?)

2008-12-03 Thread Ben Goertzel
Well, LTP is definitely real ... and I'm quite sure the scheme you describe is *not* how learning works in the brain ;-) ,,, but I'm equally sure that the full story has not yet been uncovered... ben On Wed, Dec 3, 2008 at 5:25 PM, Matt Mahoney [EMAIL PROTECTED] wrote:

Re: [agi] Seeking CYC critiques

2008-12-03 Thread Stephen Reed
Steve Richfield said: Seeing that Dr. Eliza's approach is quite different, they should then figure out that their only choices are to join or die. I wonder how they would respond? You know these guys. How would YOU play this hand? I believe that Larry Lefkowitz is still the marketing director

Re: [agi] Seeking CYC critiques

2008-12-03 Thread Steve Richfield
Ben, Oops, I have made my usual mistake of presuming what is obvious to me. OK, to correct my error... I appears obvious to me that the first person who proposes the following things together as a workable standard, will own the future 'web. This because the world will enter the metadata faster