Hi Pavel,
Caret cannot segment newborn cortex, but it can flatten hemispheres segmented
using other software (e.g., LIGASE - http://brainvis.wustl.edu/LIGASE).
I thought Fischl et al. were in the process of adding infant segmentation to
Freesurfer. Don't know where that stands, but well worth
Hello, Experts!
Is any possibility to flatten newborn cortex (inversed contrast on 3D T1)
in Caret?
If no, advise, pls, some toolkit for this.
Thank you very much!
Best,
Pavel.
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Hi,
I'm just beginning to use Caret, and I'm having some problems with the
draw border update function. From the information in Caret's help
function, the draw border update seems to allow you to make alterations to
a border that you have already confirmed. However, I have tried all three
of the
Hi Sofia,
There is no reason whatsoever you can't map a cubic 1mm volume onto your
surface. In fact, we do this occasionally (e.g., map anatomical volume
onto the surface as if it were a functional volume, to assess the
variation of GM intensity across the cortex).
How much memory do you have
Hi DonnaI have a question:is it possibile to map on a flat map
a statistical map (as a metric file that now we are able to create with 4dfp importing data from BV) with the resolution of 1x1x1I easely map a
statistical image 3x3x3, but a bigger matrix (144x192x144 instead of 48x64x48) with voxel si
dear caret-users
my email is [EMAIL PROTECTED]
[EMAIL PROTECTED]
2007-01-22
Hi Dr. Ghosh,
I think you want the login and password for the download page:
http://brainmap.wustl.edu/pub/caret/index.html
login: Rabbit
password: Carrot
If you're talking about your caret-users mailing list options, you can
get a password reminder here:
http://pulvinar.wustl.edu/mailman/op
hi Donna/David
I had downloaded the windows version of Caret5 sometime ago, but realized
that I would be better off using the linux version. Since I was doing the
analysis till now on spm, i really did not follow it up. Now that I require it
to start doing metaanalysis and display, I would be
Hi,
I recently installed Caret on a Debian distro and the install process went
fine. I downloaded the quickstart tutorial as well as the quickstart
dataset that goes along with the tutorial. When I open up the spec file
that is associated with that tutorial I get errors that say:
"Error while ac
Hello Caret users,
I am a complete novice with caret and would be more than greatful if anybody
could reply to my request.
I am trying to map functional SPM2 data from a group study to a structural
atlas. I have tried via attributes:metric:map functional volume to metric
and somehow I obviously ha
Hi,
I have only 2 errors remaining in my segmentation. I decided to go ahead and
flatten the surface. However, my flattened surface ended up with 89 node
crossovers and 108 tile crossovers. I am unable to identify the remaining 2
errors that are causing this large number of crossovers. Wo
;
To: "Caret, SureFit, and SuMS software users"
<[EMAIL PROTECTED]>
Sent: Tuesday, July 20, 2004 2:26 PM
Subject: Re: [caret-users] (no subject)
> Hi Mellanie,
>
> Your segmentation has nine cavities and after moving the crosshairs well
> within the red part of the seg
Hi Mellanie,
Your segmentation has nine cavities and after moving the crosshairs well
within the red part of the segmentation and floodfilling, update handle
count reports 4 handles.
So, I'd recommend re-running automatic error correction in your case.
It may fill the cavities and will defin
Hi Donna,
I have uploaded the segmentation file:
nov16_2002A.R.full.segment_pad_vent_corr.patchtest17.mnc
The sMRI.mnc file has not changed.
Thanks,
Mellanie
Quoting Donna Hanlon <[EMAIL PROTECTED]>:
> Hi Mellanie,
>
> Great news, and I sure needed right now (lots of system problems this
Hi Mellanie,
Great news, and I sure needed right now (lots of system problems this week).
Go ahead and upload your segmentation volume here:
http://pulvinar.wustl.edu/cgi-bin/upload.cgi
If your sMRI.mnc or .params changed from before, also upload those volumes.
It isn't unusual to have a hand
Hi Donna,
Thanks to your great advice there is only 1 handle left on the surface.
However, I am having some difficulty finding where the error lies. Would you
be able to please take a look at the image to see whether you can provide me
with some clues about the location of the offending vox
Marc Malloy
Imaging Analyst
The Rotman Research Institute
Baycrest Centre for Geriatric Care
3560 Bathurst Street
Toronto, Ontario
M6A 2E1
t. (416) 785-2500 ext. 2746
e. [EMAIL PROTECTED]
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