[ccp4bb] how to make protein topology figure based on its structure

2013-03-09 Thread LISA
Hi all, I want to make a topological figure of my protein with a b-sheet and helix based on its crystal structure. Please recommend some online sever of software? Thank you. lisa

Re: [ccp4bb] how to make protein topology figure based on its structure

2013-03-09 Thread Jon Agirre
Espript will do. http://espript.ibcp.fr/ Good luck, Jon On 9 Mar 2013 11:52, LISA science...@gmail.com wrote: Hi all, I want to make a topological figure of my protein with a b-sheet and helix based on its crystal structure. Please recommend some online sever of software? Thank you.

Re: [ccp4bb] how to make protein topology figure based on its structure

2013-03-09 Thread Anastassis Perrakis
On 9 Mar 2013, at 12:11, Jon Agirre wrote: Espript will do. http://espript.ibcp.fr Well, if you want a topology diagram, espipt will not do. Brilliant as it may be, it will annotate the topology linearly on top of a set of aligned sequences (and more!). As for a topology diagram, I

Re: [ccp4bb] Problem in running ARP_WARP in CCP4i...solved....

2013-03-09 Thread Karthikeyan S.
Dear All, The problem is solved by updating the tcsh version from 6.14.00 to 6.14.17. Thanks to Santosh, Ioan and Lamzin. With regards S. Karthikeyan On 3/7/2013 7:55 PM, Ioan Vancea wrote: Dear Karthikeyan, In order to trace the error may I ask you, please, to change the first line in

Re: [ccp4bb] Off-topic: Fungal growth in robot trays

2013-03-09 Thread Janet Newman
We add 0.02% Azide to all the water used for washing in our Phoenix, and that seems to help. Janet Newman Principal Scientist / Director, Collaborative Crystallisation Centre CSIRO Material Science and Engineering 343 Royal Parade Parkville. VIC. 3052 Australia Tel +613 9662 7326 Email

Re: [ccp4bb] how to make protein topology figure based on its structure

2013-03-09 Thread Edward A. Berry
Still, I would second Lisa's question. Your google search gives a lot of false hits, and one doesn't want to download and install a dozen programs (with license forms to fill out in some cases) to see which one works, when Partha can tell us that Pro-origami will do it and provide a link to the