resolution you might need.
Good luck.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA
On Jul 12, 2013, at 12:57 PM, Mark van der Woerd mjvdwo...@netscape.net wrote:
I just re-wrote our safety plan because we have to renew our radiation
license for our new in-house instrument. On this plan, they ask you to write
a worst-case scenario. For an in-house sealed tube instrument,
Scroll up to see where it started failing.
On Aug 3, 2013, at 11:22 AM, anil kumar anilkumar...@yahoo.co.in wrote:
Dear members,
I am attempting to install ccp4 package in my mac machine. The download of
the files was directed in a temp folder and done via the package manager
On Sep 4, 2013, at 2:57 PM, Garib N Murshudov ga...@mrc-lmb.cam.ac.uk wrote:
You may need to use the latest available version (5.8) from our LMB site
Hi Garib:
Would it be possible to add a link for the source code, so this could also be
used with Coot?
Thanks.
Bill
I remember seeing an approx (5mm)^3 haemoglobin crystal in the MRC LMB crystal
growing room, and the nucleosome crystals there were almost as big in their
longest dimension.
Bill
On Oct 24, 2013, at 8:33 AM, Tobias Beck tobiasb...@gmail.com wrote:
Dear all,
I was just wondering if anyone
On Mar 28, 2014, at 10:29 AM, Cygler, Miroslaw miroslaw.cyg...@usask.ca wrote:
Hi,
Does the ccp4 suite work with the latest OSX 10.9.2 operating system? Are
there any known problems?
Mirek
As far as I can tell, it works fine.
One problem I have heard (on the ccp4bb) with 10.9.X
corrupted.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
University of California at Santa Cruz
Santa Cruz, California 95064
USA
http://scottlab.ucsc.edu/scottlab/
On Apr 2, 2014, at 8:58 AM, Yamei Yu ymyux...@gmail.com
in that case
would probably be significant. The map image quality, after all, is what we
are after, not beautiful Table 1 statistics.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
University of California at Santa Cruz
On Jun 1, 2014, at 10:08 PM, Eze Chivi ezech...@outlook.com.ar wrote:
Hello, when I refine my structure, I see negative density around the
disulfide bond. I have 7 copies per ASU, and I can see this density in many
of them. In some cases, I see positive density also (negative in the center
xdrawchem is free and will do this.
On May 31, 2012, at 8:01 PM, Appu kumar wrote:
Dear ccp4 user,
Sorry for offset question, Anyone please tell me
the name of programme which can be used to draw enzyme reaction mechanism (
like Sn1 and Sn2). Your kind help
If RedHat allows you to install a more current version of glibc, then do that.
If not, switch to something like Ubuntu.
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California
On Jul 17, 2012, at 6:25 AM, Felix Frolow wrote:
I will wait for fink version if it will be one… :-\
Does anyone use or want this anymore?
-- Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
, and Hg++ prefers sulphur to oxygen.
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA
it will work fine. If you can get it from Best Buy
for under $300 and return it within 30 days for a full refund, it might be
worth it.
Either way, let us know.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer
I'm unable to reproduce the error.
Can you try it in a temporary new account that doesn't have anything modified,
and see if it works?
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University
I completely agree with Harry's observation about the glare screen feature.
I find it is quite literally an almost instant headache. There is an option
with the macbook pro to pay a ransom to get a usable screen, so my wife did.
On my macbook air, I found putting a dull dark grey background
On Sep 6, 2012, at 9:00 AM, eugene.krissi...@stfc.ac.uk wrote:
If this does not work for you for any reason, please (re-)read update manual
for details. If that does not help as well, please write to us.
Dear Eugene:
Will there be a way to get the corresponding changes to the source-code?
I'd just use a decent shell scripting language (like zsh) in conjunction with a
unix tool like awk. But the gnuplot option sounds ideal.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
Dear Ronan et al:
I apologize if I have missed it, but is there a simple way to obtain the
corresponding changes in the source code for those of us who compile ccp4
ourselves?
I looked on the web site and the ftp site but can't seem to find it.
Many thanks in advance.
Bill
On Oct 8, 2012,
On Oct 18, 2012, at 3:39 PM, Kip Guja k...@pharm.stonybrook.edu wrote:
If the output says: /bin/bash then do
source /Applications/ccp4-6.3.0/bin/ccp4.setup-sh ccp4i
If the output says: /bin/tcsh or /bin/csh then do
source /Applications/ccp4-6.3.0/bin/ccp4.setup-csh ccp4i
You need
On Nov 12, 2012, at 8:13 AM, Michael Roberts mrobert...@talktalk.net wrote:
Dear All,
I would be interested to learn of other crystallographers' experience in
their use of glass capillaries for protein crystal growth and X-ray
diffraction clarity.
There are many types of glass available
Hi folks:I'm trying to get a sense for how frequently this sort of thing occurs:That was a macbook air that served me well for four years, but then self-destructed. (I took it to the Apple store. They generously offered to repair it for $800 or to sell me a new one, and suggested this was normal
Make your life easier and use CCP4's imosflm
(this is the CCP4 bb after all)
On Nov 18, 2012, at 5:48 PM, 王瑞 wangrui...@gmail.com wrote:
OK,thank you all of you. I have installed one copy of HKL2000 on our
desktop computer. But for my notebook's low 1366*768 resolution, the
HKL2000 can't
Hi folks:
Are Mg++ ions ever observed to chelate primary amines?
Are there any examples in crystal structures?
Thanks.
-- Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University
Give it the suffix .ccp4
On Dec 7, 2012, at 10:52 AM, Harman, Christine christine.har...@fda.hhs.gov
wrote:
Hi,
Can anyone tell me how to open a CCP4 map in Pymol.
Thanks,
Christine
structure?
any suggestion is appreciation.
dengzq
Unless it has some other, more stable structure to compete it out, you will
have this problem persist. Even GTP in solution will do this.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center
On Feb 10, 2013, at 8:23 AM, LISA science...@gmail.com wrote:
Hi all,
My mac has the old version of phenix. How can i update to the new verison?
Should I delete the old version and download the new version to install as
the fist time ? Thanks
lisa
You can delete it and download a new
It sounds like you have updated the OS system since last updating fink.
Easiest thing is to blow it away and start over. I made some tarballs to
remove the pain:
http://scottlab.ucsc.edu/~wgscott/xtal/wiki/index.php/Installing_Fink_on_10.6_and_10.7#Installing_Fink_on_10.8
Or you can just
,
annoyances and 'features' that have been corrected in 10.8, so I either run
10.8.X or 10.6.8 on my computers in the lab.)
Good luck.
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University
I find that least-squares fitting of RNA in coot is fairly painless, robust and
straightforward. It will move all of the contents of one pdb file, not just
the RNA residues you select to align.
On Mar 14, 2013, at 1:53 PM, Chen Zhao chenzhaoh...@gmail.com wrote:
Dear all,
I am now
to them
not to have to rely only upon my limited abilities and increasingly obsolete
knowledge.
We should all be able to learn from one anther without fear of reproach.
All the best,
Bill
William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular
That last paragraph is great:
Adam is the author of the book Surviving Your Stupid, Stupid Decision to Go to
Grad School (Broadway Books, 2010)
-- Bill
On Mar 28, 2013, at 9:09 AM, Ian Tickle ianj...@gmail.com wrote:
By coincidence this just landed in my Inbox:
Howdie folks:
I've got what appears to be an inner-sphere interaction between Mg++
and the N7 of a G. The mode of binding is the same as what is observed
at this site for Mn++, confirmed with anomalous data. Our resolution
is 1.6 Å, so I am reasonably confident this is right. However, my
: 847.491.2438
cel: 773.608.9185
email: [EMAIL PROTECTED]
***
--
-
William G. Scott
contact info: http://chemistry.ucsc.edu/~wgscott
Please reply to: [EMAIL PROTECTED]
I am pretty sure it is just methylene blue.
You can also see what kind of diffraction pattern the crystal has, or
just squish it and see if it crumbles.
On Jun 14, 2008, at 1:51 PM, Mark Del Campo wrote:
Before I place an order for some Izit, are there some other dyes I
can use to check
or other academic positions? I've got to do
something to better my situation (and my wife's, who does HIV
research) or I'm going to be pushing around a shopping cart with all
three of my belongings on my way home from divorce court.
Many thanks in advance.
Bill
William G. Scott
Contact
Thanks to everyone who replied.
Doing this with HL coefficients just prior to solvent-flattening was
the least painful. I arbitrarily divided by two (see below).
Most importantly, the maps improved significantly, showing clear
nucleotide density for missing (unmodeled) RNA fragments where
It is impossible to know when someone has an anonymous user name and
email address.
I would suggest, minimally, that if someone asks us to send a paper,
they need to sign their
correspondence unambiguously (name and institution). Also, several
requests in the span of
three weeks from the
Also, I wonder if word has gotten out that we've become a literature
search service rather than
a crystallography bulletin board. A lot of these papers seemingly have
little to do with what we do...
On Jul 15, 2008, at 1:24 AM, Meg wrote:
for our research project we are on the lookout of
This is a job for the trusty Henderson-Hasselbach equation:
http://en.wikipedia.org/wiki/Henderson-Hasselbalch_equation
On Jul 21, 2008, at 8:12 PM, Meg wrote:
Dear All,
I want to prepare 25 mM sodium acetate buffer pH 4.5. can anyone
give the
exact composition of how to prepare it. we
On Mon, Jul 21, 2008 at 11:20 PM, William G. Scott
[EMAIL PROTECTED] wrote:
This is a job for the trusty Henderson-Hasselbalch equation:
http://en.wikipedia.org/wiki/Henderson-Hasselbalch_equation
On Jul 21, 2008, at 8:12 PM, Meg wrote:
Dear All,
I want to prepare 25 mM sodium acetate
Thanks to the incredibly helpful generosity of Hari Jayaram at
Brandeis, we have it now at
http://sage.ucsc.edu/xtal/wiki
This will soon be aliased to the url http://xanana.ucsc.edu/xtal/wiki
On Jul 23, 2008, at 12:27 PM, Patrick Loll wrote:
Does anyone know if the Crystallography on OS
of
the script or put in a conditional test for the operating system
version.
The latest X11 for 10.5.4 is worth getting too, as it has a lot of
improvements:
http://xquartz.macosforge.org/trac/wiki/X112.3.0
Bill
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Jul 25
Alex:
try moving /sw out of the way or not sourcing the /sw/bin/init.(c)sh
script when you start a new shell and see if that makes a difference.
My guess is phenix is using the wrong python (i.e., one in /sw). Fink
won't touch anything outside of /sw (apart from your shell's
(if you are using =
bash 3.0).
Bill
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Jul 27, 2008, at 12:07 PM, David J. Schuller wrote:
Downloaded CCP4 6.0.99 core and phaser. Did gunzip and tar to extract.
Next, the instructions say for the first 3 tarballs unpack
. Is it possible the result you are getting is correct after
all?
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Jul 27, 2008, at 6:19 PM, Sun Tang wrote:
Hello Charlie,
Thank you very much for your comments. I mostly agree with you.
However, as far as I know most
'BEGIN{$i=0}if (/^ATOM/) \
{if (substr($_,12,4) =~ / P /){$i++}; \
substr($_,22,4,sprintf(%4.0f,$i))}{print}' file.pdb
On Thu, 31 Jul 2008, William G. Scott wrote:
turned them all to zeros
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Jul 31, 2008, at 5:03 PM
].img
zsh has a lot of nice features, like customized command completions
and even remote filename completions with scp.
zsh combines the user-friendliness of tcsh with the programmability
and non-goofiness of bash.
HTH,
Bill
William G. Scott
Contact info:
http://chemistry.ucsc.edu
.)
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Aug 7, 2008, at 12:42 PM, E rajakumar wrote:
Dear All
Sorry for non crystallographic query.
Can any body mail me how to prepare Ammonium citrate
tribasic (citric acid triammonium salt) buffer pH 6.7
to 7.25 and also
Could be a case of modeler bias. Just look at the name of the
institute. This is like having a Jessie Helms endowed chair in the
therapeutic benefits of tobacco.
On Aug 8, 2008, at 8:31 AM, Jacob Keller wrote:
Dear crystallographers,
although many laughed off one CCP4BB poster's comments
Well, as long as I was right. That is the important thing. ;)
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
On Aug 9, 2008, at 11:11 AM, Ian Tickle wrote:
I think the problem is that Britannica, or even Wikipedia, is and
has never been the final arbiter of truth
Failed: can't batch-install packages: /sw/fink/dists/unstable/main/
binary-darwin-i386/sci/ccp4_6.0.99e-3_darwin-i386.deb /sw/fink/dists/
unstable/main/binary-darwin-i386/sci/ccp4-shlibs_6.0.99e-3_darwin-
i386.deb
Then, I was trying to open the task window from my previous projects
in
Under 10.5.X, sudo doesn't inherit the environment. So the best thing
to do is start a root process like this:
/bin/bash
(or /bin/zsh or /bin/tcsh )
source /usr/local/ccp4-6.0.2/include/ccp4.setup-bash
(or whatever it is for your shell)
Then issue ccp4i
William G. Scott
Contact info
On Sep 4, 2008, at 9:23 AM, Jayashankar wrote:
Dear Computational crystallographers and developers,
I still struggle with my mac book pro, to install crystallographic
softwares,
This is why I bought the mac book amateur.
The fink list has cctbx, I want to know whether this cums in
On Sep 9, 2008, at 8:12 AM, Phoebe Rice wrote:
Thanks for all the interesting answers so far!
The anisotropy issue is one that got me worrying about
truncate for data from DNA-containing crystals in
particular - and the fact that since its a default in ccp4i,
new people have stopped worrying
Anything that slows growth potentially could help.
In one case, I found by re-dissolving drops with showers of small
crystals I could get one or two huge ones. I just added 2 microliters
of water to the handing drop and allowed it to re-equilibrate.
Changing temperature or any physical
Oh, another thing you can try is simply increasing the drop volume,
especially large sitting drops. This will slow down equilibration,
and there will be proportionately more material
On Sep 9, 2008, at 11:23 PM, Vincenzo Carbone wrote:
Dear all,
I was wondering if anyone had some
On Sep 16, 2008, at 5:26 PM, Warren DeLano wrote:
Also, do crystallographers still consider stereo 3D to be a
high-priority or must-have feature in a graphics workstation?
Hi Warren:
I'd put lack of stereo 3D in the same categories as lack of grant
support or involuntary celibacy.
I'm
Hi folks:
My apologies to those who will find this irrelevant, but hopefully
they didn't read beyond the subject line. I've gotten many questions
about this, so ...
After the update to 10.5.5, you have to update (again) X11, preferably
to 2.3.1.
Why Apple didn't include this in the
Hi Nat:
On Sep 17, 2008, at 11:14 AM, Nathaniel Echols wrote:
those of us who came of age (technologically speaking) in an era of
ubiquitous bright, high-contrast (and increasingly massive) LCD
screens
can't bear to look at a CRT display any more.
The day I stopped using CRTs in the
On Sep 17, 2008, at 8:21 PM, Engin Ozkan wrote:
As a grad student we had access to stereo, I did not use it much. I
have to say I do not know why new students would be swayed just by
them. As a young grad student, I was amazed by chemistry in action
(and I still am), and did not need
Top of the morning (here at least):
CCP4 6.0.99 builds its own libxml2. It there a way to get it to use a
later version I have already installed? The reason is that this is
messing up other programs that for some reason I can't fathom (the
evil $DYLD_LIBRARY_PATH remains unset) are
Warren DeLano once suggested myreciprocalspace.com
On Sep 18, 2008, at 9:15 AM, Juergen Bosch wrote:
Hi all,
this is another generation question :-)
Some of you are familiar with the social networking webpage
Facebook, now there's something similar for Academics
http://www.academia.edu/
On Sep 20, 2008, at 2:18 PM, Jayashankar wrote:
Dear friends and crystallographers,
Are they mutually exclusive?
During One of my lab meeting ,
I told twinning in crystals are ok, because ccp4's recent releases
just need
the keyword TWIN to solve them,
I believe the closer you get
Now that it is past 12:00 in Brookhaven, I want to be the first to
wish Bob Sweet a happy birthday!
Bob's brilliance is matched by his helpfulness, kindness and
compassion; he very much lives up to his name.
So on behalf of probably hundreds of us, happy birthday.
It's been awhile (too
Howdie folks:
If I already have shared libraries available for clipper, mmdb, ssm,
cctbx and so forth, is it possible to get ccp4's configure to find
these and then to build using these rather than recompiling identical
or in some cases slightly older versions?
Thanks.
Bill Scott
that the API of
your system libraries is consistent with the ccp4-provided ones.
Tim
--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
On Sun, 21 Sep 2008, William G. Scott wrote:
Howdie folks:
If I already have shared libraries available
to rerun the command fink selfupdate and then used fink
update
coot
but it still give the same error.
Any help would be greatly appreciated!
Regards, Azmiri
On Sun, Sep 21, 2008 at 12:01 AM, William G. Scott
[EMAIL PROTECTED] wrote:
Now that it is past 12:00 in Brookhaven, I want to be the first
If this remains problematic, there are other options to avoid compiling:
http://tinyurl.com/coot-on-osx
On Sep 21, 2008, at 6:06 PM, William G. Scott wrote:
Hi Azmiri:
I'm assuming you have pango1-xft2-ft219-dev installed, since the
build-depends should have this listed.
Try
fink
Even better, with 2 ns pulses, we should be able to do time-resolved
crystallography after looting the office supply cabinet.
Unfortunately, our division cut their scotch tape budget.
On Oct 23, 2008, at 6:38 AM, R.M. Garavito wrote:
To all,
For those of us who are do-it-yourselfers and
Dear Gerard et al:
I'm actually one of those whom has struggled unsuccessfully to install
Sharp. I can't even remember why, and I am certain it was entirely my
fault, but this did get me wondering...
mlphare and MIR/MAD phasing seems to me the weak point in the ccp4
distribution. (I've
Hi David:
I think molrep in CCP4 will calculate this, if there is nothing else.
Bill
On Oct 29, 2008, at 8:39 PM, David M Shechner wrote:
Hallo, one and all,
I was wondering if anyone knew of a quick method (say, a publicly-
available
script, or subroutine in a CCP4 program) by which one
Try soaking for about 5 seconds. You should only need to coat the
surface of the crystal to cryoprotect it.
Bill
On Oct 31, 2008, at 2:22 PM, E rajakumar wrote:
When I soak the
crystals more than a minute
On Nov 18, 2008, at 7:01 AM, Mischa Machius wrote:
For linux, I would recommend a commercial solution,
For linux, I actually ditched the commercial solution for Ubuntu,
because it was vastly easier as a non-expert to maintain.
Having said that, like you, I have found running Mac OS X to
) 480-1430
Fax (204) 474-7603
Web: http://www.umanitoba.ca/science/microbiology/staff/mark/
On 18-Nov-08, at 9:42 AM, Anastassis Perrakis wrote:
On Nov 18, 2008, at 16:26, William G. Scott wrote:
On Nov 18, 2008, at 7:01 AM, Mischa Machius wrote:
For linux, I would recommend a commercial
On Dec 13, 2008, at 7:38 AM, Jayashankar wrote:
since we are end users,
As am I.
we have to depend on big heads like you.
Is this an oblique Santa Cruz reference?
and i believe that things will be bug free and efficient soon.
Some people believe Obama will soon repeal the Patriot
I've just now added these as fink packages (cvs unstable). Sorry for
the delay. I dropped the ball.
Steffen Schmidt did the hard work, so many thanks to Seffen!!!
Bill
On Dec 17, 2008, at 7:56 AM, Andrzej Lyskowski wrote:
Hi,
I've just upgraded my fink distro and was wondering what
More specifically, issue
fink selfupdate-cvs (or fink selfupdate-rsync)
fink install itcl itk iwidgets tdom tkimg tktreectrl
On Dec 17, 2008, at 7:56 AM, Andrzej Lyskowski wrote:
Hi,
I've just upgraded my fink distro and was wondering what else has to
be done concerning configuration
: /usr/X11/lib/libXdamage.1.dylib
Referenced from: /sw/bin/coot
Reason: Incompatible library version: coot requires version 3.0.0 or
later, but libXdamage.1.dylib provides version 2.0.0
[1]Trace/BPT trapcoot
Engin
William G. Scott wrote:
More specifically, issue
fink
On Dec 19, 2008, at 7:43 AM, Eric Liu wrote:
Hi All
Hi Eric:
I am a new user for OS X system and this question may sound naive. I
followed the instruction on website Crystallography on OS X,
installed X11,
Xcode and fink on my OS X 10.5.5, but still could not install ccp4
with
fink.
Hi Harry et al:
Well, it it makes you feel any better, imosflm works great for me on
ubuntu ibex:
http://diablo.ucsc.edu/~wgscott/debian/imosflm_xubuntu_ibex.png
I just lost my imosflm virginity at the synchrotron a few nights ago
(they have it working or rh at SSRL).
If it helps
: Lieven Buts
Date: September 5, 2008 1:57:29 AM PDT
To: William G. Scott
Subject: BLTwish issue
Hi,
some time ago I read your discussions with the Debian blt package
maintainer
about the inclusion of the separate bltwish binary, and the problems
caused
for CCP4i by its absence in the standard
The ActiveTcl distribution can be installed anywhere, eg /opt
Then point imosflm to the wish binary in that.
William G. Scott
(via iPod and gmail -- forgive the typos and brevity)
Please reply to wgsc...@chemistry.ucsc.edu
On Jan 6, 2009, at 3:03 PM, Salgado, Paula
p.salg...@imperial.ac.uk
Both 8.04 and 8.10 (the current Ubuntu version -- why not install
that?) have gparted, a very easy to use gui partition editor
interface. The defaults are almost certainly what you need, and you
can rearrange the sizes of the partitions interactively from the
install CD.
On Jan 17,
the
calculation go faster and you can't see the difference in the maps, in
my experience.
HTH,
Bill
William G. Scott
contact info: http://chemistry.ucsc.edu/~wgscott
On Jan 22, 2009, at 10:32 PM, Nobuo OKAZAKI wrote:
Dear all,
I tried to build CCP4 6.1 with Intel Compiler Intel Math
Hi Bob et al:
I think that this is the convolution of the helical transform with the
Bragg diffraction, which you often see in nucleic acid diffraction
patters. I think I first saw it, in fact, at your beam-line in 1994,
with ribozyme crystals. (Aaron Klug had to explain it to me.)
The
Just download the shiny new Google Chrome web-browser and install the
NSA and Homeland Security plug-ins, and the problem will simply
disappear.
On Jan 31, 2009, at 6:50 AM, Miguel Ortiz Lombardia wrote:
Dear all,
While searching for some definition of rotations angles I have
bumped
] On Behalf Of
William G. Scott [wgsc...@chemistry.ucsc.edu]
Sent: 31 January 2009 15:48
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Google marks CCP4 web site as a potential
security threat
Just download the shiny new Google Chrome web-browser and install the
NSA and Homeland Security plug-ins
Dear Choel:
This is probably my fault I think, not ccp4's. I'll look into it as
soon as I get a chance (which means after I teach this afternoon).
Sorry for this.
Briefly, check the ownership/permissions on ~/.CCP4 and if needed
change it so you have write permissions.
Bill
On Feb
Some things improve with age. Here is one of my favorite stories:
http://tinyurl.com/oldtrna
The crystal structure of yeast phenylalanine tRNA at 2.0 Å resolution:
cleavage by Mg2+ in 15-year old crystals
Luca Jovine, Snezana Djordjevica and Daniela Rhodes
We have re-determined the
Hi Andy:
Just be very careful of special pleading type arguments. I really
think this is trying to tell you something, along with the
Ramachandran plot. On a more practical level, the PDB will flag it
when you try to deposit it. There is something wrong.
It might be worth making a
On Feb 7, 2009, at 8:16 PM, Engin Ozkan wrote:
Hi, everyone,
Could there be an error in the ccp4-6.1.1 setup files (ccp4-6.1.1/
include/ccp4.setup) in the fink version? After the last update, my
CCP4_MASTER variable was defined as /sw/share/sw/share/xtal.
Obviously, that did not work.
On Feb 16, 2009, at 10:22 AM, Jayashankar wrote:
Dear Scientists,
It may be too much...
But as a biophysics student I would like to appreciate and feel
happy to
have pdb
structures as my computers screen savers than to have some funny and
fancy
stuffs.
And it may help me as a motivator
I just emailed the guy today and asked him if there was any hope of
getting an intel version in the future, and he wrote back almost
immediately and said he is working on it and is about 90% done. The
current one runs only on PPC.
I tried to hint subtly that it would be kind of cool to
On Mar 2, 2009, at 7:47 AM, Justin Lecher wrote:
William G. Scott schrieb:
On Mar 2, 2009, at 4:25 AM, Vellieux Frederic wrote:
Any idea?
Is it there?
http://www.mail-archive.com/ubuntu-b...@lists.ubuntu.com/msg663049.html
It was on the ccp4bb not on thc COOT list.
Sue me
Hi Eric:
You could try generating a SMILES string for your compound using this:
http://www.molinspiration.com/cgi-bin/properties
(or search to see if one is available) and feed that into elbow, eg:
elbow.builder --
smiles
=
CC12C
On Mar 11, 2009, at 8:49 PM, Raja Dey wrote:
Dear Friends,
I am using a Mac OS X Version 10.5.6 with Intel Core 2 Duo
Processor. At present I have the X Window system --- Xquartz 2.1.5 -
(xorg-server 1.3.0-apple22) (2.1.5).
I installed many crystallographic tools through fink. When I am
On Mar 12, 2009, at 9:01 AM, Andreas Förster wrote:
Every night I pray to a different god for version 2.4 to actually
work.
Prayer might be making it worse, depending upon the wrath and
vindictiveness of the imaginary deity of choice:
You could try something like this (bash/zsh/sh):
alias imosflm='MOSDIR=${PWD} imosflm'
The single quotes are required for it to do the right thing.
Bill
On Mar 18, 2009, at 6:49 AM, James Foadi wrote:
Dear MOSFLM/IMOSFLM people,
when I start the new version of imosflm I expect it to
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