Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support
Hi Alan, thanks for your support as well. Bonne continuation. I'll give it a try on Windows then. Cheers, Michel Michel Audette, Ph.D. Assistant Professor, Department of Modeling, Simulation and Visualization Engineering, Old Dominion University, Norfolk, VA. From: cellml-discussion-boun...@cellml.org [cellml-discussion-boun...@cellml.org] On Behalf Of Alan Garny [alan.ga...@inria.fr] Sent: Wednesday, May 09, 2012 3:45 AM To: 'CellML Discussion List' Subject: Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support Dear Michel, > -Original Message- > From: cellml-discussion-boun...@cellml.org [mailto:cellml-discussion- > boun...@cellml.org] On Behalf Of Andrew Miller > > On 09/05/12 16:43, Audette, Michel A. wrote: > > How can I simply get through the two builds? > OpenCell is no longer maintained in Auckland; instead, Alan Garny (based at > Inria) is working on a complete rewrite which he is calling OpenCOR > (Website: http://opencor.ws). > > ... > > I think Alan will be able to give you more information about OpenCOR and its > status, such as whether it is suitable as a replacement for particular > applications of OpenCell yet, and if not when it will be. Just to add to what Andrew said, OpenCOR cannot currently be used as a replacement for OpenCell. I am currently busy with other aspects of OpenCOR, but I will from August/September be resuming my work on OpenCOR with the view of making it our official replacement for OpenCell. The (current) aim is to have this done by early 2013. Sorry if this seems far away, but various funding constraints have got me 'distracted' a bit. Otherwise, and depending on what you want are after, you might be interested in having a look at COR (http://cor.physiol.ox.ac.uk/) which is another CellML-based environment (it has two main 'limitations' though: it 'only' works on Windows and it 'only' supports CellML 1.0). Best wishes, Alan. ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion -- BEGIN-ANTISPAM-VOTING-LINKS -- Teach CanIt if this mail (ID 656664153) is spam: Spam: https://www.spamtrap.odu.edu/b.php?i=656664153&m=e80ae37c2b9c&t=20120509&c=s Not spam: https://www.spamtrap.odu.edu/b.php?i=656664153&m=e80ae37c2b9c&t=20120509&c=n Forget vote: https://www.spamtrap.odu.edu/b.php?i=656664153&m=e80ae37c2b9c&t=20120509&c=f -- END-ANTISPAM-VOTING-LINKS ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support
Hi Andrew, thanks for clarifying that. I'll get started on OpenCor then. Best wishes, Michel Michel Audette, Ph.D. Assistant Professor, Department of Modeling, Simulation and Visualization Engineering, Old Dominion University, Norfolk, VA. From: cellml-discussion-boun...@cellml.org [cellml-discussion-boun...@cellml.org] On Behalf Of Andrew Miller [ak.mil...@auckland.ac.nz] Sent: Wednesday, May 09, 2012 12:55 AM To: cellml-discussion@cellml.org Subject: Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support On 09/05/12 16:43, Audette, Michel A. wrote: > Dear CellML users, > > I have a recent version of Ubuntu, and when I try to build opencell, > configure tells me > > configure: error: The CellML API directory /usr/local did not contain > interfaces/ICIS.xpt. Give the path to the CellML API with > --with-cellml_api=/path/to/cellml_api. Ensure you built the API with XPCOM, > Context, CCGS, CIS and CeLEDS support. > > When I download the source tarball of cellml-api-1.10 or 1.11, in either > case, when I set XPCOM support to ON with CMake, I get > > CMake Error at build/xpcom.cmake:1 (MESSAGE): > XPCOM support needs to be ported to cmake; please do this and submit a > patch if you want to use it! > > How can I simply get through the two builds? OpenCell is no longer maintained in Auckland; instead, Alan Garny (based at Inria) is working on a complete rewrite which he is calling OpenCOR (Website: http://opencor.ws). If you want to build OpenCell, you would need to use a version of the CellML API that was released around the same time as the version of OpenCell you are trying to build (note: the last release of OpenCell pre-dates the change to the CMake buildsystem), as the CellML API has changed over time and OpenCell isn't being updated to stay up to date with the changes. I think Alan will be able to give you more information about OpenCOR and its status, such as whether it is suitable as a replacement for particular applications of OpenCell yet, and if not when it will be. Best wishes, Andrew ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion -- BEGIN-ANTISPAM-VOTING-LINKS -- Teach CanIt if this mail (ID 656592620) is spam: Spam: https://www.spamtrap.odu.edu/b.php?i=656592620&m=72db17a70953&t=20120509&c=s Not spam: https://www.spamtrap.odu.edu/b.php?i=656592620&m=72db17a70953&t=20120509&c=n Forget vote: https://www.spamtrap.odu.edu/b.php?i=656592620&m=72db17a70953&t=20120509&c=f -- END-ANTISPAM-VOTING-LINKS ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support
Dear Michel, > -Original Message- > From: cellml-discussion-boun...@cellml.org [mailto:cellml-discussion- > boun...@cellml.org] On Behalf Of Andrew Miller > > On 09/05/12 16:43, Audette, Michel A. wrote: > > How can I simply get through the two builds? > OpenCell is no longer maintained in Auckland; instead, Alan Garny (based at > Inria) is working on a complete rewrite which he is calling OpenCOR > (Website: http://opencor.ws). > > ... > > I think Alan will be able to give you more information about OpenCOR and its > status, such as whether it is suitable as a replacement for particular > applications of OpenCell yet, and if not when it will be. Just to add to what Andrew said, OpenCOR cannot currently be used as a replacement for OpenCell. I am currently busy with other aspects of OpenCOR, but I will from August/September be resuming my work on OpenCOR with the view of making it our official replacement for OpenCell. The (current) aim is to have this done by early 2013. Sorry if this seems far away, but various funding constraints have got me 'distracted' a bit. Otherwise, and depending on what you want are after, you might be interested in having a look at COR (http://cor.physiol.ox.ac.uk/) which is another CellML-based environment (it has two main 'limitations' though: it 'only' works on Windows and it 'only' supports CellML 1.0). Best wishes, Alan. ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support
On 09/05/12 16:43, Audette, Michel A. wrote: Dear CellML users, I have a recent version of Ubuntu, and when I try to build opencell, configure tells me configure: error: The CellML API directory /usr/local did not contain interfaces/ICIS.xpt. Give the path to the CellML API with --with-cellml_api=/path/to/cellml_api. Ensure you built the API with XPCOM, Context, CCGS, CIS and CeLEDS support. When I download the source tarball of cellml-api-1.10 or 1.11, in either case, when I set XPCOM support to ON with CMake, I get CMake Error at build/xpcom.cmake:1 (MESSAGE): XPCOM support needs to be ported to cmake; please do this and submit a patch if you want to use it! How can I simply get through the two builds? OpenCell is no longer maintained in Auckland; instead, Alan Garny (based at Inria) is working on a complete rewrite which he is calling OpenCOR (Website: http://opencor.ws). If you want to build OpenCell, you would need to use a version of the CellML API that was released around the same time as the version of OpenCell you are trying to build (note: the last release of OpenCell pre-dates the change to the CMake buildsystem), as the CellML API has changed over time and OpenCell isn't being updated to stay up to date with the changes. I think Alan will be able to give you more information about OpenCOR and its status, such as whether it is suitable as a replacement for particular applications of OpenCell yet, and if not when it will be. Best wishes, Andrew ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
