Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support

2012-05-09 Thread Audette, Michel A.
Hi Alan, 

thanks for your support as well. Bonne continuation. 

I'll give it a try on Windows then. 

Cheers,

Michel
Michel Audette, Ph.D.
Assistant Professor,
Department of Modeling, Simulation and Visualization Engineering,
Old Dominion University,
Norfolk, VA.

From: cellml-discussion-boun...@cellml.org 
[cellml-discussion-boun...@cellml.org] On Behalf Of Alan Garny 
[alan.ga...@inria.fr]
Sent: Wednesday, May 09, 2012 3:45 AM
To: 'CellML Discussion List'
Subject: Re: [cellml-discussion] trouble building on Ubuntu: for opencell   
build, told to build CellML API with XPCOM,     but CellML API does not CMake 
with XPCOM support

Dear Michel,

> -Original Message-
> From: cellml-discussion-boun...@cellml.org [mailto:cellml-discussion-
> boun...@cellml.org] On Behalf Of Andrew Miller
> > On 09/05/12 16:43, Audette, Michel A. wrote:
> > How can I simply get through the two builds?
> OpenCell is no longer maintained in Auckland; instead, Alan Garny (based
at
> Inria) is working on a complete rewrite which he is calling OpenCOR
> (Website: http://opencor.ws).
>
> ...
>
> I think Alan will be able to give you more information about OpenCOR and
its
> status, such as whether it is suitable as a replacement for particular
> applications of OpenCell yet, and if not when it will be.

Just to add to what Andrew said, OpenCOR cannot currently be used as a
replacement for OpenCell. I am currently busy with other aspects of OpenCOR,
but I will from August/September be resuming my work on OpenCOR with the
view of making it our official replacement for OpenCell. The (current) aim
is to have this done by early 2013. Sorry if this seems far away, but
various funding constraints have got me 'distracted' a bit. Otherwise, and
depending on what you want are after, you might be interested in having a
look at COR (http://cor.physiol.ox.ac.uk/) which is another CellML-based
environment (it has two main 'limitations' though: it 'only' works on
Windows and it 'only' supports CellML 1.0).

Best wishes, Alan.

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Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support

2012-05-09 Thread Audette, Michel A.
Hi Andrew, 

thanks for clarifying that. I'll get started on OpenCor then. 

Best wishes,

Michel

Michel Audette, Ph.D.
Assistant Professor,
Department of Modeling, Simulation and Visualization Engineering,
Old Dominion University,
Norfolk, VA.

From: cellml-discussion-boun...@cellml.org 
[cellml-discussion-boun...@cellml.org] On Behalf Of Andrew Miller 
[ak.mil...@auckland.ac.nz]
Sent: Wednesday, May 09, 2012 12:55 AM
To: cellml-discussion@cellml.org
Subject: Re: [cellml-discussion] trouble building on Ubuntu: for opencell 
build, told to build CellML API with XPCOM, but CellML API does not CMake with 
XPCOM support

On 09/05/12 16:43, Audette, Michel A. wrote:
> Dear CellML users,
>
> I have a recent version of Ubuntu, and when I try to build opencell, 
> configure tells me
>
> configure: error: The CellML API directory /usr/local did not contain 
> interfaces/ICIS.xpt. Give the path to the CellML API with 
> --with-cellml_api=/path/to/cellml_api. Ensure you built the API with XPCOM, 
> Context, CCGS, CIS and CeLEDS support.
>
> When I download the source tarball of cellml-api-1.10 or 1.11, in either 
> case, when I set XPCOM support to ON with CMake, I get
>
> CMake Error at build/xpcom.cmake:1 (MESSAGE):
> XPCOM support needs to be ported to cmake; please do this and submit a
> patch if you want to use it!
>
> How can I simply get through the two builds?
OpenCell is no longer maintained in Auckland; instead, Alan Garny (based
at Inria) is working on a complete rewrite which he is calling OpenCOR
(Website: http://opencor.ws).

If you want to build OpenCell, you would need to use a version of the
CellML API that was released around the same time as the version of
OpenCell you are trying to build (note: the last release of OpenCell
pre-dates the change to the CMake buildsystem), as the CellML API has
changed over time and OpenCell isn't being updated to stay up to date
with the changes.

I think Alan will be able to give you more information about OpenCOR and
its status, such as whether it is suitable as a replacement for
particular applications of OpenCell yet, and if not when it will be.

Best wishes,
Andrew

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Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support

2012-05-09 Thread Alan Garny
Dear Michel,

> -Original Message-
> From: cellml-discussion-boun...@cellml.org [mailto:cellml-discussion-
> boun...@cellml.org] On Behalf Of Andrew Miller
> > On 09/05/12 16:43, Audette, Michel A. wrote:
> > How can I simply get through the two builds?
> OpenCell is no longer maintained in Auckland; instead, Alan Garny (based
at
> Inria) is working on a complete rewrite which he is calling OpenCOR
> (Website: http://opencor.ws).
> 
> ...
> 
> I think Alan will be able to give you more information about OpenCOR and
its
> status, such as whether it is suitable as a replacement for particular
> applications of OpenCell yet, and if not when it will be.

Just to add to what Andrew said, OpenCOR cannot currently be used as a
replacement for OpenCell. I am currently busy with other aspects of OpenCOR,
but I will from August/September be resuming my work on OpenCOR with the
view of making it our official replacement for OpenCell. The (current) aim
is to have this done by early 2013. Sorry if this seems far away, but
various funding constraints have got me 'distracted' a bit. Otherwise, and
depending on what you want are after, you might be interested in having a
look at COR (http://cor.physiol.ox.ac.uk/) which is another CellML-based
environment (it has two main 'limitations' though: it 'only' works on
Windows and it 'only' supports CellML 1.0).

Best wishes, Alan.

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Re: [cellml-discussion] trouble building on Ubuntu: for opencell build, told to build CellML API with XPCOM, but CellML API does not CMake with XPCOM support

2012-05-08 Thread Andrew Miller

On 09/05/12 16:43, Audette, Michel A. wrote:

Dear CellML users,

I have a recent version of Ubuntu, and when I try to build opencell, configure 
tells me

configure: error: The CellML API directory /usr/local did not contain 
interfaces/ICIS.xpt. Give the path to the CellML API with 
--with-cellml_api=/path/to/cellml_api. Ensure you built the API with XPCOM, 
Context, CCGS, CIS and CeLEDS support.

When I download the source tarball of cellml-api-1.10 or 1.11, in either case, 
when I set XPCOM support to ON with CMake, I get

CMake Error at build/xpcom.cmake:1 (MESSAGE):
XPCOM support needs to be ported to cmake; please do this and submit a
patch if you want to use it!

How can I simply get through the two builds?
OpenCell is no longer maintained in Auckland; instead, Alan Garny (based 
at Inria) is working on a complete rewrite which he is calling OpenCOR 
(Website: http://opencor.ws).


If you want to build OpenCell, you would need to use a version of the 
CellML API that was released around the same time as the version of 
OpenCell you are trying to build (note: the last release of OpenCell 
pre-dates the change to the CMake buildsystem), as the CellML API has 
changed over time and OpenCell isn't being updated to stay up to date 
with the changes.


I think Alan will be able to give you more information about OpenCOR and 
its status, such as whether it is suitable as a replacement for 
particular applications of OpenCell yet, and if not when it will be.


Best wishes,
Andrew

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