Re: [CF-metadata] new standard name request for pH

2009-04-30 Thread Lowry, Roy K
-boun...@cgd.ucar.edu] On Behalf Of Christiane Textor [christiane.tex...@lsce.ipsl.fr] Sent: 30 April 2009 17:13 To: Lowry, Roy K; Jonathan Gregory Cc: cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] new standard name request for pH Dear all, I am not an expert ocean acidification at all

Re: [CF-metadata] new standard name request for pH

2009-04-30 Thread Lowry, Roy K
advances on his conventions obviously need consideration. Cheers, Roy. From: Christiane Textor [christiane.tex...@lsce.ipsl.fr] Sent: 30 April 2009 20:41 To: Lowry, Roy K; Lowry, Roy K Cc: cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] new standard name

Re: [CF-metadata] new standard name request for pH

2009-05-07 Thread Lowry, Roy K
of the effects errors of that magnitude have on deep ocean carbon budget calculations. Cheers, Roy. -Original Message- From: cf-metadata-boun...@cgd.ucar.edu [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of John Graybeal Sent: 02 May 2009 01:28 To: CF Metadata List; Lowry, Roy K

[CF-metadata] Salinity units

2009-06-17 Thread Lowry, Roy K
Dear All, During an exercise with Alison mapping the CF Standard Names to a units vocabulary in the BODC vocabulary server I noticed that the units for salinity were '1.00E-03', i.e. parts per thousand. My understanding in that since the introduction of the Practical Salinity Scale that

Re: [CF-metadata] Standard name definitions ... are these formal or flexible

2009-07-29 Thread Lowry, Roy K
Hi Bryan, Steve's query presents something of a Standard Names crossroads. 'Chlorophyll' is a very generic word covering a group of pigments (chlorophyll-a, chlorophyll-b, divinyl chlorophyll-a, etc.) that some analytical techniques can resolve whilst others cannot. 'Chlorophyll' is also a

Re: [CF-metadata] Standard name definitions ... are these formal or flexible

2009-07-29 Thread Lowry, Roy K
[mailto:bryan.lawre...@stfc.ac.uk] Sent: 29 July 2009 09:56 To: Lowry, Roy K Cc: cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] Standard name definitions ... are these formal or flexible Hi Roy Glad that it looks like Steve's specfiic problem isn't a problem given the name change and definition you

Re: [CF-metadata] Dealing with large numbers of flag values innetcdf cf

2009-10-27 Thread Lowry, Roy K
Hello Martin, There is another possible solution to your problem, which we are looking at for dealing with a data source flag to be used with the GEBCO bathymetric grid. This is to put a URI base into an attribute that when concatenated with a flag values gives the flag definition from a

Re: [CF-metadata] Dealing with large numbers of flag values innetcdf cf

2009-10-27 Thread Lowry, Roy K
/ Cheers, Roy. -Original Message- From: John Caron [mailto:ca...@unidata.ucar.edu] Sent: 27 October 2009 13:17 To: Lowry, Roy K Cc: martin.juc...@stfc.ac.uk; cf-metadata@cgd.ucar.edu; Weatherall, Pauline Subject: Re: [CF-metadata] Dealing with large numbers of flag values innetcdf cf

Re: [CF-metadata] CF point observation Conventions ready for review

2009-11-15 Thread Lowry, Roy K
. From: Richard Signell [rsign...@gmail.com] Sent: 15 November 2009 15:00 To: Lowry, Roy K Cc: ngalbra...@whoi.edu; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] CF point observation Conventions ready for review Roy, I come from this community also

Re: [CF-metadata] CF point observation Conventions

2009-11-20 Thread Lowry, Roy K
measurement at a single x,y,z,t. Is there a single point in your feature types? Why assign the term point to a set of measurements with single x, y, and z and progressing t, as opposed to a set of measurements with single x, y, t values but varying z? Cheers - Nan Lowry, Roy K wrote: .. The feature

Re: [CF-metadata] seeking CF name for total water column height

2010-01-27 Thread Lowry, Roy K
Dear All, I think a new Standard Name 'sea_floor_depth_below_sea_surface' is what's needed here. My definition for this would be 'The vertical distance between the sea surface and the seabed at a given point in space and at a given instant in time or averaged over a time interval that is

Re: [CF-metadata] seeking CF name for total water column height

2010-01-28 Thread Lowry, Roy K
into a wall. Cheers, Roy. -Original Message- From: Jeff deLaBeaujardiere [mailto:jeff.delabeaujardi...@noaa.gov] Sent: 28 January 2010 14:06 To: Lowry, Roy K Cc: John Graybeal; cf-metadata@cgd.ucar.edu; Mike Garcia Subject: Re: [CF-metadata] seeking CF name for total water column height I

Re: [CF-metadata] seeking CF name for total water column height

2010-02-02 Thread Lowry, Roy K
Dear Jonathan, The alias structure has developed into a deprecation mechanism and some of the more recent corrections have changed the meanings of the terms, so that the term and its alias are no longer synonyms. Using the alias mechanism to establish synonyms between undeprecated terms

Re: [CF-metadata] seeking CF name for total water column height

2010-02-05 Thread Lowry, Roy K
Hello Nan, I was arguing at the start of this thread that an instantaneous single-beam echosounder measurement is the so close to being the same thing as a BPR measurement in tidal mode with waves filtered out (ever looked at echosounder data from an anchored ship?) that they should be called

Re: [CF-metadata] water level with/without datum

2010-02-23 Thread Lowry, Roy K
Hello Jonathan, I have concerns about having separate names for river, lake and sea. If you have them for height, then the logic would extend to temperature. I have temperature data from a boat that started in the North Sea, went up the Humber and then up to the navigable limit of the

Re: [CF-metadata] water level with/without datum

2010-02-23 Thread Lowry, Roy K
To: Lowry, Roy K Cc: cf-metadata@cgd.ucar.edu Subject: RE: [CF-metadata] water level with/without datum Hi Roy, Would simply inventing an artificial new term to represent sea+lakes+rivers be an option here? Presumably, back in the day, there was no word for a land-locked body of fresh water so

Re: [CF-metadata] water level with/without datum

2010-02-26 Thread Lowry, Roy K
Hi Nan, Using unqualified 'water' to signify water within a water body works for me. Cheers, Roy. -Original Message- From: cf-metadata-boun...@cgd.ucar.edu [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Nan Galbraith Sent: 25 February 2010 16:47 To: Jonathan Gregory Cc: John

Re: [CF-metadata] non-standard standard_names

2010-05-13 Thread Lowry, Roy K
Dear All, The 'fast track' approach being discussed has promise and is pretty much in line with the ISO vocabulary model (in which terms have proposed, accepted, deprecated or deleted) used in resources like the GEMET thesaurus. However, there are important details to consider, such as version

Re: [CF-metadata] Seeking new CF standard names (9) for sea surface wave parameters

2010-09-17 Thread Lowry, Roy K
Hello Jonathan, The term 'statistics' has a slightly different meaning for wave data. Essentially, what wave instrumentation does is record vertical displacement of the sea surface at very high frequency for a period of say ten minutes. Spectral analysis techniques are then used to derive

Re: [CF-metadata] Seeking new CF standard names (9) for sea surface wave parameters

2010-10-13 Thread Lowry, Roy K
Hello Andrew and Jonathan, First, I think this discussion is heading towards reasonable compromise avoiding my concerns of a massive proliferation in cell methods and the pitfall of concepts that are explainable in the context of their parameter, but meaningless in isolation (e.g. explaining

Re: [CF-metadata] New standard names for satellite obs data

2010-10-20 Thread Lowry, Roy K
Dear All, I'd just like to reinforce John's last point that the semantics of 'instrument' and 'platform' are becoming blurred in these discussions. From my perspective as one who has to map to CF datasets I would prefer it if the semantics of terms used in Standard Names had a universally

Re: [CF-metadata] New standard names for satellite obs data

2010-10-20 Thread Lowry, Roy K
Dear All, As others have said, I think this debate is irrelevant as there should be no need for string timestamps in NetCDF. Providing a Standard Name only encourages what I consider to be bad practice. Cheers, Roy. -Original Message- From: cf-metadata-boun...@cgd.ucar.edu

Re: [CF-metadata] New standard names for satellite obs data

2010-10-20 Thread Lowry, Roy K
Hi John, ISO-8601 allows timestamps to any resolution from year to millisecond, so 2010, 2010-10, 2010-10-20 are all valid so the string can be any length from 4 to 27 (e.g. 2010-10-20T14:53:00.000Z-15), unless restricted through an 8601 profile (as many communities do) Cheers, Roy.

Re: [CF-metadata] New standard names for satellite obs data

2010-10-20 Thread Lowry, Roy K
, it's a pain to represent variable length strings in NetCDF, but there is a maximum length for ISO8601 strings.) Hope this helps, Jon -Original Message- From: cf-metadata-boun...@cgd.ucar.edu [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Lowry, Roy K Sent: 20 October 2010 10:00

Re: [CF-metadata] New standard names for satellite obs data (time as ISO strings)

2010-10-22 Thread Lowry, Roy K
Hi Jon, Full ISO8601 does carry time zone expressed in hours relative to UT in the syntax Zx where x is the offset from Zulu at the right-hand end of the string. Cheers, Roy. -Original Message- From: cf-metadata-boun...@cgd.ucar.edu [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf

Re: [CF-metadata] Interpretation of unspecified time zone (was: New standard names for satellite obs data (timeas ISO strings))

2010-10-22 Thread Lowry, Roy K
...@nsidc.org] Sent: 22 October 2010 17:32 To: cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] Interpretation of unspecified time zone (was: New standard names for satellite obs data (timeas ISO strings)) Hi, On Fri, 22 Oct 2010, Lowry, Roy K wrote: I wonder how many existing CF data files would have

Re: [CF-metadata] Correct name for aerosol size distributionexpressedin numbers ?

2010-11-24 Thread Lowry, Roy K.
Hi Alison, If a community uses the term 'diameter' then I would stick with that and in our experience with both sediment grain-size and aerosol size spectra 'diameter' is the word exclusively used. Cheers, Roy. -Original Message- From: cf-metadata-boun...@cgd.ucar.edu

Re: [CF-metadata] Standard name request for ocean colour and iceberg concentration

2010-12-03 Thread Lowry, Roy K.
Yes, that's my understanding. Cheers, Roy. From: Lauret Olivier [mailto:olau...@cls.fr] Sent: 03 December 2010 10:22 To: Lowry, Roy K.; Jonathan Gregory Cc: Laurence Crosnier; cf-metadata@cgd.ucar.edu; Cristina Tronconi; Bruce Hackett; o.go...@met.no; Thomas LOUBRIEU; Lia Santoleri; Philippe

Re: [CF-metadata] Web reference to a standard name?

2010-12-13 Thread Lowry, Roy K.
Hi Benno, That's a pretty thorough overview of the current position. One minor point is that the URIs you give from my system serve version 9 - not the current version. Replace the '9' by 'current' to get the latest version e.g. http://vocab.ndg.nerc.ac.uk/list/P071/9

Re: [CF-metadata] Web reference to a standard name?

2010-12-14 Thread Lowry, Roy K.
/16/CFSN0023 http://cf-pcmdi.llnl.gov/documents/cf-standard-names/standard-name-ta ble/16/cf-standard-name-table.html#air_temperature plus: http://cf-pcmdi.llnl.gov/documents/cf-standard-names/standard-name-ta ble/16/cf-standard-name-table.xml Cheers, Dom On 14/12/10 08:18, Lowry, Roy K

Re: [CF-metadata] CF feature types and definitions

2010-12-29 Thread Lowry, Roy K.
Hi Nan, Let's consider how you're moored instrument data are mapped into NetCDF. If a given parameter is stored as a 2-D array with time as one dimension and instrument depth as the other then I would describe the data in that array as a 'profile series'. If they are stored as a set of 1-D

Re: [CF-metadata] Ambient light [Sec=Unclassified]

2011-01-07 Thread Lowry, Roy K.
Hi Miles, Should there be anything in the Standard Name to specify the wavelengths of light detected in the measurement e.g. luminous_intensity_of_shortwave_radiation_in air? Cheers, Roy. From: cf-metadata-boun...@cgd.ucar.edu

Re: [CF-metadata] Ambient light [Sec=Unclassified]

2011-01-07 Thread Lowry, Roy K.
Hi Miles, I would confirm with somebody who undestands the data before making any decisions. Cheers, Roy. From: Miles Jordan [miles.jor...@aad.gov.au] Sent: 07 January 2011 12:07 To: Lowry, Roy K. Cc: Jonathan Gregory; cf-metadata@cgd.ucar.edu Subject

Re: [CF-metadata] Ambient light [Sec=Unclassified]

2011-01-12 Thread Lowry, Roy K.
measurement of the intensity of visible light that passes through or is emitted from a given area'. Anyone anything better? Cheers, Roy. -Original Message- From: Miles Jordan [mailto:miles.jor...@aad.gov.au] Sent: 11 January 2011 23:56 To: Lowry, Roy K. Cc: Jonathan Gregory; cf-metadata

Re: [CF-metadata] Ambient light [Sec=Unclassified]

2011-01-15 Thread Lowry, Roy K.
January 2011 02:23 To: Lowry, Roy K. Cc: Miles Jordan; cf-metadata@cgd.ucar.edu; Jonathan Gregory Subject: Re: [CF-metadata] Ambient light [Sec=Unclassified] Is ''A photometric measurement of' a critical part of the definition? I can imagine another magical technology that measures the intensity

Re: [CF-metadata] CF standard_name irradiation ?

2011-02-18 Thread Lowry, Roy K.
Hi Martin, There are two Standard Names 'downwelling_shortwave_flux_in_air' and 'downwelling_longwave_flux_in_air'. Do either of these fit your data. I have associated the former with downwelling irradiance data from PAR cosine-collector light meters. Cheers, Roy. -Original

Re: [CF-metadata] help

2011-02-23 Thread Lowry, Roy K.
Hi Karl, Christina's problem is because her usage of standard name modifier is changing the canonical units from those of the unmodified Standard Name. Only solutions I can see are either to omit the Standard Name from this channel or set up a new Standard Name for raw chorophyll as counts.

Re: [CF-metadata] standard_name modifiers

2011-02-25 Thread Lowry, Roy K.
Dear Christina, As this debate unfolds I am coming to the realisation that there might be a significant difference between what you mean by 'chlorophyll count' (the unmodified reading from a fluorometer analogue-to-digital converter that is a function of chlorophyll concentration) and what CF

Re: [CF-metadata] standard_name modifiers

2011-02-28 Thread Lowry, Roy K.
Hi Martin, ' It's only replacing an underescore by a blank anyhow ;-)' This isn't strictly true. As the semantics infrastructure stands at the moment the deprecation procedure is to label the deprecated Standard Name as an 'alias' with another Standard Name specified as its replacement. I

Re: [CF-metadata] udunits time unit question

2011-03-31 Thread Lowry, Roy K.
Dear All, This debate between Chris and Benno hinges upon how one determines the sampling interval for a time series. Benno depends upon semantics encoded in the units of measure field - something I have done in the past although I am now convinced that it is not best practice. Chris

Re: [CF-metadata] physical vs dimensional units

2011-03-31 Thread Lowry, Roy K.
Hi John, We label Units of Measure with a URI (e.g. SDN:P061::ULAA represents metres), which represents a term in the P061 vocabulary (http://vocab.ndg.nerc.ac.uk/P061/list/current). The vocab (born in the late 70s) is a work of pragmatism that contains a mixture of 'dimensional units' plus

Re: [CF-metadata] Proposal for new standard names: depth/bathy/topo rel to datum

2011-04-14 Thread Lowry, Roy K.
Hello Justin/Jonathan, To me, the term or concept 'bathymetry' is the spatial variation of seafloor depth and should only be applied to a grouping of depth measurements with associated co-ordinate variables and not to just a depth parameter. Cheers, Roy. -Original Message- From:

Re: [CF-metadata] [Standard name request] property changes over time

2011-05-16 Thread Lowry, Roy K.
Hello Jonathan, Paul's neutral density definition looked OK to me, although I'm not a physical oceanographer. If it helps I used http://oceanworld.tamu.edu/resources/ocng_textbook/chapter06/chapter06_05.htm As an aid to checking it out. Cheers, Roy. -Original Message- From:

Re: [CF-metadata] WS querying cf meta data catalog

2011-05-26 Thread Lowry, Roy K.
Dear Uwe, It exists. A copy of the Standard Names is served through the NERC Vocabulary Server (http://www.bodc.ac.uk/products/web_services/vocab/). The references to the Standard Names list are: Live terms: http://vocab.ndg.nerc.ac.uk/list/P071/current/ Deprecated terms:

Re: [CF-metadata] new TEOS-10 standard names

2011-07-21 Thread Lowry, Roy K.
Dear All, I think the point we're missing here is that the existing salinity Standard Name is a much broader term than the TEOS-10 recommendations, covering true practical salinity from conductivity measurements, other types of salinity measurement and salinity computed by a whole host of

Re: [CF-metadata] new TEOS-10 standard names:- reply to two emails.

2011-07-26 Thread Lowry, Roy K.
was definitely not Practical Salinity. With best wishes, Trevor -Original Message- From: Lowry, Roy K. [mailto:r...@bodc.ac.uk] Sent: Friday, 22 July 2011 7:10 AM To: McDougall, Trevor (CMAR, Hobart); ngalbra...@whoi.edu; CF-metadata@cgd.ucar.edu; Durack, Paul (CMAR, Hobart

Re: [CF-metadata] per-variable metadata?

2011-08-04 Thread Lowry, Roy K.
Hi Nan, Encoding what I would regard as usage metadata into ancilliary variables is one solution, but I would much rather see a formalised metadata model for doing this. As you say a standard way of doing this is long overdue. My hope is that SeadataNet II starting later this year will take

Re: [CF-metadata] per-variable metadata?

2011-08-05 Thread Lowry, Roy K.
metadata. Cheers, Roy. From: Nan Galbraith [ngalbra...@whoi.edu] Sent: 05 August 2011 16:30 To: Lowry, Roy K.; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] per-variable metadata? Hi Roy and all - Do you see a possible place for this metadata in a more structured

Re: [CF-metadata] per-variable metadata?

2011-08-05 Thread Lowry, Roy K.
of internet access becomes an issue then we need to look at URI resolution to physical XML files sitting with the NetCDF. Cheers, Roy. From: John Graybeal [jbgrayb...@mindspring.com] Sent: 05 August 2011 17:57 To: Lowry, Roy K. Cc: ngalbra...@whoi.edu; cf

Re: [CF-metadata] per-variable metadata?

2011-08-06 Thread Lowry, Roy K.
is defined that can sit side-by-side with internal encodings for a usage metadata subset would make me happy and shut me up (on this issue at least). Cheers, Roy. From: Nan Galbraith [ngalbra...@whoi.edu] Sent: 05 August 2011 20:58 To: Lowry, Roy K. Cc: John Graybeal

Re: [CF-metadata] A question regarding standard names

2011-08-26 Thread Lowry, Roy K.
Hi Jim, Not the first time this has cropped up on the CF list. The problem is that when the Standard Names started out they were designed as OPTIONAL terms to identify model fields that referred to a given geophysical phenomenon. There has been a sort of mission creep since then with

Re: [CF-metadata] A question regarding standard names

2011-08-26 Thread Lowry, Roy K.
TEMP_Resolution; char TEMP_Instrument_manufacturer(depth, 20); char TEMP_Instrument_model(depth,6); ... Nan On 8/26/11 9:05 AM, Lowry, Roy K. wrote: Hi Jim, Not the first time this has cropped up on the CF list. The problem is that when the Standard Names started out they were designed as OPTIONAL terms

Re: [CF-metadata] standard names for stations

2011-08-27 Thread Lowry, Roy K.
Dear All, I would suggest some fine tuning of this to: platform_name platform_id (note this needs to be alphanumeric to support ICES ship codes widely used in oceanography) platform_id_authority (mandatory if platform_id present) platform_description I wonder if the concept of authority is

Re: [CF-metadata] Branching history

2011-09-06 Thread Lowry, Roy K.
Hi All, Something in the back of my mind from a project in which I have peripheral engagement (so may be a red herring or worse). Didn't Argo put a lot of effort into a NetCDF history encoding for their format? Cheers, Roy. From:

Re: [CF-metadata] standard names for stations

2011-09-16 Thread Lowry, Roy K.
Hi Jonathan, My vote would go to something that is both human and machine-readable. There are standards designed for this such as JSON. Some might consider this comes down on the side of the machine more than the human, but I find once I get my in I can read JSON much easier than XML. If

Re: [CF-metadata] new TEOS-10 standard names

2011-10-05 Thread Lowry, Roy K.
' then their data will be regarded as useless for many physical oceanographic applications. Cheers, Roy. -Original Message- From: trevor.mcdoug...@csiro.au [mailto:trevor.mcdoug...@csiro.au] Sent: 05 October 2011 00:12 To: Lowry, Roy K.; j.m.greg...@reading.ac.uk; paul.dur...@csiro.au Cc

Re: [CF-metadata] new TEOS-10 standard names

2011-10-06 Thread Lowry, Roy K.
- From: Rainer Feistel [mailto:rainer.feis...@io-warnemuende.de] Sent: 06 October 2011 06:32 To: paul.dur...@csiro.au; j.m.greg...@reading.ac.uk; Lowry, Roy K.; trevor.mcdoug...@csiro.au Cc: stephen.griff...@noaa.gov; paul.bar...@csiro.au; King, Brian A.; r...@eos.ubc.ca; CF-metadata

Re: [CF-metadata] SUGGESTED WAY FORWARD FOR CF-metadata:- lets finalize this discussion.

2011-10-08 Thread Lowry, Roy K.
definition. Hopefully, case closed! Cheers, Roy. From: trevor.mcdoug...@csiro.au [trevor.mcdoug...@csiro.au] Sent: 08 October 2011 02:49 To: Lowry, Roy K.; rainer.feis...@io-warnemuende.de; paul.dur...@csiro.au; j.m.greg...@reading.ac.uk Cc: stephen.griff

Re: [CF-metadata] standards for probabilities

2011-11-15 Thread Lowry, Roy K.
, these still need managing and if they become excessively abundant they also become difficult to navigate. Cheers, Roy. From: Vegard Bønes [vegard.bo...@met.no] Sent: 15 November 2011 13:17 To: Lowry, Roy K. Cc: cf-metadata@cgd.ucar.edu; Jonathan Gregory

Re: [CF-metadata] new TEOS-10 standard names

2011-11-26 Thread Lowry, Roy K.
Hi John, I have a concern with your exclusion of the surface from the term sea_water_temperature. What Standard Name would you use for the temperature data stream in a CTD profile that extends from the surface to depth? I'm more comfortable with the idea of keeping sea_water_temperature

Re: [CF-metadata] udunits corresponding to Forel-Ule, milliequivalent

2011-12-09 Thread Lowry, Roy K.
Hi Upendra, The Forel-Ule is another example where parameter semantics have been off-loaded in the units of measure, such as 'milligrams per gram of dry sediment'. I have been working to eliminate this by moving the semantics into the parameter description to leave a UDUNITS-compatible UoM.

Re: [CF-metadata] standard name for sea water ph without

2011-12-09 Thread Lowry, Roy K.
Hi Upendra, It comes down to the significance of the difference between parameters according to tha application for which they are used. There ae two temperature scales - IPTS68 and ITS90. However, pragamatically for the period of time when IPTS68 was used the measurement uncertaintyfor sea

Re: [CF-metadata] standard name for sea water ph without

2011-12-10 Thread Lowry, Roy K.
Hi Philip, I like that idea. I've always tried to label data such that future users can judge the applicability of that data to their requirements. pH on an unknown scale might be useless to a deep-ocean carbonate chemist, but works for some datasets I have from the Humber where pH ranges

Re: [CF-metadata] Convention attribute

2011-12-29 Thread Lowry, Roy K.
Dear All, One thought that this debate has brought to mind is what should the practice be if the file convention is a profile (in the ISO sense) of CF? In other words, the file conforms to a given version of CF modified by a formally documented set of extensions (e.g. optional CF attributes

Re: [CF-metadata] Convention attribute

2011-12-29 Thread Lowry, Roy K.
declaration I have stated that mark'sFruityProfile is CF compliant, is that enough information? cheers mark -Original Message- From: cf-metadata-boun...@cgd.ucar.edu on behalf of Lowry, Roy K. Sent: Thu 29/12/2011 10:08 To: Jonathan Gregory; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata

Re: [CF-metadata] Convention attribute

2012-01-02 Thread Lowry, Roy K.
January 2012 18:47 To: Lowry, Roy K. Cc: CF Metadata List; sdn2-t...@seadatanet.org Subject: Re: [CF-metadata] Convention attribute I wasn't sure how to parse these, I'm a little slow today I guess. After trying a few ways, I decided they mostly use spaces to separate convention identifiers

Re: [CF-metadata] Ocean CTD data following CF Conventions v1.6

2012-04-02 Thread Lowry, Roy K.
. ... ...¶ Regards, Andrew - Original Message - From: Lowry, Roy K. To: andrew walsh Cc: Jim Biard ; Upendra Dadi ; cf-metadata@cgd.ucar.edu ; Luke Callcut ; g...@metoc.gov.au ; sdn2-t...@seadatanet.org Sent: Tuesday, April 03, 2012 2:16 PM Subject: RE: [CF-metadata] Ocean CTD data following CF

Re: [CF-metadata] Ocean CTD data following CF Conventions v1.6

2012-04-03 Thread Lowry, Roy K.
-ordinate harmonisation to the the application tools. Yet another 'senior moment'.. Cheers, Roy. From: cf-metadata-boun...@cgd.ucar.edu [cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Lowry, Roy K. [r...@bodc.ac.uk] Sent: 03 April 2012 06:46 To: andrew

Re: [CF-metadata] Quality flag values for missing data

2012-08-24 Thread Lowry, Roy K.
Hi Randy, The practice recommended for SeaDataNet is to specify a fill value for the flag that is defined in the flag convention as 'missing value'. I always feel more comfortable with explicit semantics. Cheers, Roy. From: CF-metadata

Re: [CF-metadata] example of sea_surface_wave_directional_variance_spectral_density

2012-08-29 Thread Lowry, Roy K.
Hi Ellyn, Encoding wave spectra in a CF-compliant manner is an issue that I plan to address on behalf of SeaDataNet in the next month or so. The point I'd reached in thinking this through was to use the timeSeriesProfile feature type with frequency as the z co-ordinate. I think this OK, but

Re: [CF-metadata] example of sea_surface_wave_directional_variance_spectral_density

2012-08-29 Thread Lowry, Roy K.
be misunderstanding something in John's view of feature types. Cheers, Roy. -Original Message- From: Ellyn Montgomery [mailto:emontgom...@usgs.gov] Sent: 29 August 2012 15:47 To: Lowry, Roy K. Cc: cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] example

Re: [CF-metadata] example of sea_surface_wave_directional_variance_spectral_density

2012-08-30 Thread Lowry, Roy K.
: Hattersley, Richard [mailto:richard.hatters...@metoffice.gov.uk] Sent: 30 August 2012 16:52 To: Lowry, Roy K.; Ellyn Montgomery Cc: cf-metadata@cgd.ucar.edu Subject: RE: [CF-metadata] example of sea_surface_wave_directional_variance_spectral_density Hi Roy, There are some fairly explicit statements

Re: [CF-metadata] Proposal for standard name snow_cover_binary_mask

2012-09-05 Thread Lowry, Roy K.
Dear All, It's becoming clear that we need a Standard Name component to cover boolean values whose trigger point may then be specified elsewhere as Jonathan stated. In the biological domain, the syntax 'presence_of_x' where x is a taxon name is often used. Could this be adopted giving the

Re: [CF-metadata] Proposal for standard name snow_cover_binary_mask

2012-09-05 Thread Lowry, Roy K.
Suggestion 'presence_of_surface_snow' should have been 'presence_of_surface_snow_cover' to maintain consistency From: CF-metadata [cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Lowry, Roy K. [r...@bodc.ac.uk] Sent: 05 September 2012 19:49 To: Ute

[CF-metadata] Standard Name Serving

2012-09-14 Thread Lowry, Roy K.
Dear All, Up until now, addressing of CF Standard Names through the NERC Vocabulary Server has been through opaque identifiers such as 'P07' and 'CFV8N1'. In response to requests for addressing through semantically meaningful URLs we have introduced a system of alternative URLs using the

[CF-metadata] FW: CF Names vocabulary

2012-09-19 Thread Lowry, Roy K.
To: Ben Domenico Cc: caru...@mbari.org; nat...@imaa.cnr.it; Leadbetter, Adam; jgrayb...@ucsd.edu; lbermu...@opengeospatial.org; Lowry, Roy K. Subject: Re: CF Names vocabulary Hello All (those who I know Ben, Luiz, Stefan, John) and those who I do not know (Carlos Adam) I am at the UNIDATA pol

Re: [CF-metadata] Another potentially useful extension to the standard_name table

2012-09-22 Thread Lowry, Roy K.
Hello Philip/John, As John might remember, I attempted this approach a while back (I think I started in 2004) on another parameter vocabulary (the BODC vocabulary subsequently adopted by SeaDataNet). I have yet to succeed in implementing it operationally. This was because of two issues: 1)

Re: [CF-metadata] Another potentially useful extension to the standard_name table

2012-09-22 Thread Lowry, Roy K.
Hello Martin, I understand exactly what you want - or at least I thing I do. I think that you would like to enter a URL representing the concept 'carbon monoxide' and get back a document giving you all the Standard Names pertaining to carbon monoxide. Am I right? My vision - which I'm

Re: [CF-metadata] Another potentially useful extension to the standard_name table

2012-09-24 Thread Lowry, Roy K.
: Jonathan Gregory [j.m.greg...@reading.ac.uk] Sent: 24 September 2012 17:53 To: Schultz, Martin Cc: Lowry, Roy K.; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] Another potentially useful extension to the standard_name table Dear Martin, Roy et al. I understand exactly what you want - or at least

Re: [CF-metadata] Another potentially useful extension to the standard_name table

2012-09-24 Thread Lowry, Roy K.
) then no, but there are opinions that have me 75% convinced that these are of little consequence in a linked data environment. Cheers, Roy. From: simon@csiro.au [simon@csiro.au] Sent: 24 September 2012 04:33 To: Lowry, Roy K.; jgrayb...@ucsd.edu; cameronsmi...@llnl.gov Cc: cf

[CF-metadata] Extensions to the Standard Name table

2012-10-19 Thread Lowry, Roy K.
Dear All, Martin Schultz was proposing an extension to the Standard Name table to provide a means of easily identifying the Standard Names associated with a given atmospheric contaminant. What follows provides an alternative way to address his use case. Go to the URL

Re: [CF-metadata] new standard name proposal for total ozone in DU

2012-12-04 Thread Lowry, Roy K.
be moles per square metre. Cheers, Roy. From: Christophe Lerot [christophe.le...@aeronomie.be] Sent: 04 December 2012 10:20 To: Lowry, Roy K. Cc: alison.pamm...@stfc.ac.uk; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] new standard name proposal

Re: [CF-metadata] new standard name proposal for total ozone in DU

2012-12-05 Thread Lowry, Roy K.
Tel: +44 1235 778065 NCAS/British Atmospheric Data CentreEmail: alison.pamm...@stfc.ac.uk STFC Rutherford Appleton Laboratory R25, 2.22 Harwell Oxford, Didcot, OX11 0QX, U.K. -Original Message- From: Lowry, Roy K. [mailto:r...@bodc.ac.uk] Sent: 04 December 2012 10:23

[CF-metadata] sea_water_pressure

2013-01-10 Thread Lowry, Roy K.
Dear All, It has been pointed out to me that the SeaDataNet NetCDF specification uses 'sea_water_pressure' as the Standard Name in cases where pressure is used as the z co-ordinate in observational data such as CTD profiles. The definition for this Standard Name is: the pressure that exists

Re: [CF-metadata] New standard name: datetime_iso8601

2013-01-15 Thread Lowry, Roy K.
Dear All, I totally agree with Heiko's words of caution. In my experience (over 30 years of oceanographic data management) duplicated information inevitably leads to inconsistent information. Cheers, Roy. Please note that I now work part-time from Tuesday to Thursday. E-mail response on

[CF-metadata] Usage of the 'Conventions' attribute

2013-01-23 Thread Lowry, Roy K.
Dear All, Currently, the 'Conventions' attribute is restricted to be a global attribute. There is currently a requirement to label multiple QC flag variables following different conventions with their source convention and having the 'Conventions' attribute as a variable attribute for these

Re: [CF-metadata] Usage of the 'Conventions' attribute

2013-01-23 Thread Lowry, Roy K.
, Roy K. wrote: Dear All, Currently, the 'Conventions' attribute is restricted to be a global attribute. There is currently a requirement to label multiple QC flag variables following different conventions with their source convention and having the 'Conventions' attribute as a variable

Re: [CF-metadata] Usage of the 'Conventions' attribute (Nan Galbraith)

2013-01-28 Thread Lowry, Roy K.
Dear Jonathan and Martin, What I was trying to do here was legitimise an already established practice in at least two communities in the observational oceanographic domain with thousands of files in existence with the non-standard usage of the Conventions attribute. I also carried the practice

Re: [CF-metadata] Usage of the 'Conventions' attribute

2013-01-28 Thread Lowry, Roy K.
Hi Nan, Would the CF web site be an appropriate place for communities to post the attributes they have added to CF - either with or without namespace prefixes? Cheers, Roy. From: CF-metadata [cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Nan Galbraith

Re: [CF-metadata] any convention for variables abbreviation ?

2013-02-14 Thread Lowry, Roy K.
Hi Nan, Slight misunderstanding I fear. The p021 vocabulary is a vocabulary that MAPS to the CF Standard Names, but it doesn't include the Standard Names themselves. What I think Nicolas is after is something slightly different, namely a standardised 6-byte representation for each Standard

Re: [CF-metadata] sea_water_turbidity?

2013-02-27 Thread Lowry, Roy K.
Hello Alison, I had been hanging back waiting for John to respond to Jonathan's comment, because nephelometric turbidity is a phenomenon that I've seen described - but not necessarily defined - in a couple of different ways. However, whilst both turbidity and secchi disk depth (and attenuance

Re: [CF-metadata] proposed standard names for Enterococcus and Clostridium perfringens

2013-03-22 Thread Lowry, Roy K.
Dear All, I see Pandora's Box opening before us. I have been down the road of setting up my equivalent to Standard Names (the BODC Parameter Usage Vocabulary) with concepts that include specification of the biological entity, which is why I have a vocabulary with getting on for 30,000

Re: [CF-metadata] [sdn2-tech] RE: proposed standard names for Enterococcus and Clostridium perfringens

2013-03-23 Thread Lowry, Roy K.
://nodc.ogs.trieste.it/ Il 22/03/2013 16:15, Lowry, Roy K. ha scritto: Hi Klaas, What I was trying to say in my e-mail to CF was that I strongly suggest that CF decouples the Standard Name from the species name. However, should they choose not to then the cfu semantics should be removed from

Re: [CF-metadata] [sdn2-tech] RE: proposed standard names for Enterococcus and Clostridium perfringens

2013-03-23 Thread Lowry, Roy K.
/ Il 22/03/2013 16:15, Lowry, Roy K. ha scritto: Hi Klaas, What I was trying to say in my e-mail to CF was that I strongly suggest that CF decouples the Standard Name from the species name. However, should they choose not to then the cfu semantics should be removed from the units of measure

[CF-metadata] Keeping taxon names out of Standard Names

2013-03-25 Thread Lowry, Roy K.
Dear All, I am considering setting up a Trac ticket aimed at making the following changes to the standard 1) Addition of a section on handling biological data in CF 2) Addition of a couple of parameter attributes for taxon name and taxon identifier (e.g. Aphia ID) 3) Proposing a set of

Re: [CF-metadata] proposed standard names for Enterococcus and?Clostridium perfringens

2013-03-25 Thread Lowry, Roy K.
Thanks Jonathan, I was indeed responsible for introducing 'green dogs' to discussions in CF, but since then my experience has expanded further into biological data and, in particular, into the world of contaminants in biota through EMODNET and our work in BODC with the Sea Mammal Research

[CF-metadata] Taxa in CF. Some questions

2013-04-02 Thread Lowry, Roy K.
Dear All, I am currently working on a Trac ticket submission for handling of taxonomic data in CF and thought I'd run an example past the list to make sure I've got it right. Jonathan suggested using a container variable analogous to geographic regions. My interpretation of this would result

Re: [CF-metadata] Taxa in CF. Some questions

2013-04-02 Thread Lowry, Roy K.
Hello Jonathan, The reason that I used MAXT rather than TIME is that I am trying to follow the point data conventions with the possibility of multiple time series (along the INSTANCE dimension) of different lengths stored as padded rather than ragged arrays in a single file. Your example is

Re: [CF-metadata] interplay of standard name modifiers, cell_methods -- is there a problem?

2013-04-03 Thread Lowry, Roy K.
Hi Jim, There are a lot of nails being hit on the head at the moment. The Standard Name attribute was conceived as a standardised label for the geophysical phenomenon - a sort of grouping term for what was being measured. Note that the Standard Name isn't a mandatory attribute in CF - the

Re: [CF-metadata] New CoordinateType: Spectral?

2013-04-10 Thread Lowry, Roy K.
Hello Randy, If doing this, please make it clear that by 'Spectral' you mean 'wavelength spectral'. There are other types of spectra, such as frequency (used for wave spectra) and size (used optical plankton counters and other particle sizers). Cheers, Roy. Please note that I now work

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