Hi,
I have a question regarding web site
http://debian-med.debian.net/tasks/bio.en.html, listing Debian Med packages.
I see that my package biomaj is listed in No known packages available
but some record of interest.
I have packaged the application and I am waiting for review/upload to
I repackaged Biomaj using some rules located at:
http://lists.debian.org/debian-java/2010/08/msg00148.html
recommended by Charles Plessy.
I also fixed all others recommendations done by a few, so package should
be ready to be mentored.
I modified the package to create 2 packages, 1 for biomaj
yeap!
Thanks,
Olivier
Le 1/20/11 6:45 PM, Andreas Tille a écrit :
On Thu, Jan 20, 2011 at 06:36:54PM +0100, Olivier Sallou wrote:
I also fixed all others recommendations done by a few, so package should
be ready to be mentored.
I modified the package to create 2 packages, 1 for biomaj and 1
one possibility is to ask in configuration if SQL setup should be done.
If yes, ask for a user/password ot the database and do your stuff.
If no, user will do it after installation manually.
Olivier
Le 1/21/11 1:58 PM, Jan Kechel a écrit :
-BEGIN PGP SIGNED MESSAGE-
Hash: RIPEMD160
Just a hint on Blast+
This is a rewrite of Blast2 with performance improvements and supposed
eaiser to use.
But binaries and options were changed. There is a small fdscription we
made herte: http://drmotifs.genouest.org/2011/02/new-blast-web-form/
Le 2/2/11 10:08 PM, Andreas Tille a écrit :
Regarding biomaj, I have created a get-orig-source to download source
code and rearrange it to create the debian structure, to be used for
packaging.
We have an issue with our forge that is being fixed, so it cannot be
tested for the moment, but it should be ready in the next few days.
On our
Hi Andreas,
Biomaj is at least ok, the SVN issue has been fixed and I successfully
generated the package with svn anonymous access.
I created a script get-orig-source in debian dir.
It should be launched from root directory of the package to create
.orig.tar.gz
Both biomaj and
Hi,
I have a question regarding packaging when we are not the software
maintainer.
I am packaging a software (GBrowse) but I am not the developper of the
software. To create a correct package, I need to update the install scripts.
I wonder how this should be manage:
- Should I keep the
if it should be packaged as a Debian package as it was kept
as a snapshot release and there is no more support.
What do you think?
Olivier
Le 2/13/11 9:42 PM, Andreas Tille a écrit :
Hi Olivier,
On Thu, Jan 20, 2011 at 06:36:54PM +0100, Olivier Sallou wrote:
I also fixed all others recommendations
Hi,
I want to build a lib with maven in my packaging process.
I have an issue though with fakeroot. Maven requires a repository (under
debian is /usr/share/maven-repo.
I do not have the rights (unless being root) to write in this dir, so it
fails with fakeroot.
I tried to use a specific
package.
Olivier
Le 2/14/11 9:50 AM, Andreas Tille a écrit :
On Mon, Feb 14, 2011 at 09:41:00AM +0100, Olivier Sallou wrote:
Hi,
the issue is commons-cli-2 never released an official release. Version
is stable, but project dropped on snapshot release.
The version 1 is not compatible (new features
libraries),
while biomaj core can be set in main.
Regards
Olivier
Le 2/15/11 1:03 PM, Andreas Tille a écrit :
Hi Olivier
On Tue, Feb 15, 2011 at 12:18:18PM +0100, Olivier Sallou wrote:
Hi,
I have updated biomaj to include commons-cli2 source with biomaj and to
build the jar at packaging time.
I
Hi,
there is the BioMAJ tool, currently in packaging for Debian.
Biomaj takes a property file that describes a remote data bank and the
post-processes to apply on the downloaded data.
You can get more info at http://biomaj.genouest.org.
Biomaj takes in charge the download, the postprocesses and
that already has the capability to collect data from
various servers.
Scott
On Feb 16, 2011, at 4:06 AM, Olivier Sallou wrote:
Hi,
there is the BioMAJ tool, currently in packaging for Debian.
Biomaj takes a property file that describes a remote data bank and the
post-processes to apply
PM, Scott Christley a écrit :
Ok, great. Is the core package working and available in SVN? I will give it
a try.
Scott
On Feb 16, 2011, at 10:58 AM, Olivier Sallou wrote:
The web interface will have togo to non-free 'cause it depends on several GWT
libraries which are not packaged
Data versioning is very difficult as all data sources do not keep old
versions online, only a current one.
With biomaj we propose to keep old versions (or a number of old
versions), but this is locally, it cannot help to reproduce an
experiment with exactly the same data if remote source
Hi,
I did not get this error on my computer.
COmmons-cli2 is a dependency on Biomaj, not packaged, so I had to get
source and compile it with Biomaj.
Certainly a missing dependency in control file that was already
installed on my system
I gonna have a look and let you know
Olivier
Le
Hi,
gotcha! I think this is because you compile with the GNU Java compiler
(gnu.jcg)
I compile with OpenJDK, which is set as a dependency. I do not know
however how to force the use of this compiler
Olivier
Le 2/17/11 2:10 AM, Scott Christley a écrit :
Hello,
I get the following
+0100, Olivier Sallou wrote:
Hi,
gotcha! I think this is because you compile with the GNU Java compiler
(gnu.jcg)
I compile with OpenJDK, which is set as a dependency. I do not know
however how to force the use of this compiler
I have not tried but I would consider mentioning openjdk-6-jdk
unfortunatly, GWT is not my only concern.
This is the first one, but there is also SmartGWT which has many
dependencies (GWT Tools and others...)
Though, independently from GWT link for Biomaj, I could help maintaining
it in the future.
Olivier
Le 2/17/11 12:58 PM, Steffen Möller a écrit :
Hi,
the plugin must be under other tags.
Example:
build
plugins
plugin
groupIdorg.apache.maven.plugins/groupId
artifactIdmaven-compiler-plugin/artifactId
configuration
source1.5/source
target1.5/target
/configuration
/plugin
So your pom should look like:
?xml version=1.0 encoding=UTF-8?
Hi,
I repackaged gbrowse2, I gonna update the svn of gbrowse on trunk
I will let you know once ready to have a look ...
Olivier
Le 2/6/11 1:52 PM, Charles Plessy a écrit :
Le Sun, Feb 06, 2011 at 10:49:42AM +0100, Olivier Sallou a écrit :
I am looking at GBrowse2 packaging.
If I succeed
Hi Charles,
will you have time to have a look to Gbrowse2 package or should I
request an other sponsor ?
I successfully packaged it and removed most of lintian warns (a few man
related remains)
Thanks
Olivier
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I gonna have a look.
Most deps are set with perl debian package helper. I will try with pbuilder
Le 3/1/11 5:28 AM, Charles Plessy a écrit :
Le Tue, Mar 01, 2011 at 08:41:37AM +0900, Charles Plessy a écrit :
Le Mon, Feb 28, 2011 at 04:35:09PM +0100, Olivier Sallou a écrit :
Hi Charles
on this...
When did you this?
Le 3/1/11 11:05 AM, Andreas Tille a écrit :
On Tue, Mar 01, 2011 at 05:13:36PM +0900, Charles Plessy wrote:
Le Tue, Mar 01, 2011 at 09:01:30AM +0100, Olivier Sallou a écrit :
Hi Charles,
could you tell me which command you used ?
I tried with pbuilder:
pbuilder build
I use latest lintian and man pages are present in my package, I checked.
Did you apply the patch?
I added many of the man pages with the patch
Lintian still show 3 missing man pages and some man issues in a few.
Fixing man issue may be difficult as doc is extracted from perl files
automatically
It seems that main authors did not make such work :-(
I will try to have a look for those files (css) or see with authors.
Regarding included javascript librairies, expected versions are still in
experimental. I contacted maintainer and he told me he should move them to sid
in a short time.
Hi Andreas,
I have modified biomaj-watcher packaging to workaround packaging issues with
dependencies.
I still depend on GWT2 and a few other libs, but now I can compile all is
required, so I do not hold anymore any biomajwatcher java class or lib
All binaries are only external lib
Hi,
could someone tell me how to install a debian-med task , such as bio-ngs
etc...
Thanks
Olivier
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Thanks for your answer.
In fact I do not have urgent need for ngs tasks, this was an example
to understand behavior.
Classification is certainly not complete, but will never be I think.
Now we could define smaller categories (finer grain) but would be
difficult to maintain (and difficult to
Package: wnpp
Severity: wishlist
X-Debbugs-CC: debian-med@lists.debian.org
Maintainer: Olivier Sallou olivier.sal...@irisa.fr
Language: C
License: GNU v2
Upstream Author: Nicolas Joly nj...@pasteur.fr
Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/
Description:
Squizz is a sequence
Andreas.
On Thu, Mar 17, 2011 at 05:56:23PM +0100, Olivier Sallou wrote:
Package: wnpp
Severity: wishlist
X-Debbugs-CC: debian-med@lists.debian.org
Maintainer: Olivier Sallouolivier.sal...@irisa.fr
Language: C
License: GNU v2
Upstream Author: Nicolas Jolynj...@pasteur.fr
Homepage: ftp
to the suggested
package layout.
Kind regards and thanks for your work on squizz in any case
Andreas.
On Fri, Mar 18, 2011 at 01:19:42PM +0100, Olivier Sallou wrote:
Hi,
squizz is packaged on SVN and has been tested in my config (and pbuilder
too).
Can someone check it and upload it, if ok ;-)
[1
:05PM +0100, Olivier Sallou a écrit :
I could also create (sub)binary packages with package name libbioseq
and libbioali, but I don't think it is acceptable to use several
packages names (not like squizz-xxx). My control file would have
source package squizz and binary packages squizz, libbioali
and
libsquizz binary: package-name-doesnt-match-sonames libbioali0 libbioseq0
I also tried with source...
Thanks
Olivier
Le 3/18/11 8:40 PM, Andreas Tille a écrit :
On Fri, Mar 18, 2011 at 06:32:05PM +0100, Olivier Sallou wrote:
Hi Andreas,
I am splitting squizz in packages squizz (binary), libsquizz
This should be ok now.
I tested installed packages, man pages etc..
Copyright issue is fixed (at least worarounded).
Thanks for your help
Olivier
Le 3/21/11 12:32 PM, Andreas Tille a écrit :
On Mon, Mar 21, 2011 at 11:07:31AM +0100, Olivier Sallou wrote:
I just have an issue with my lintian
ok , I gonna update to add a get-orig source to remove file and keep
patch to remove tests on file.
I will let you know
Olivier
Le 3/21/11 1:44 PM, Andreas Tille a écrit :
On Mon, Mar 21, 2011 at 01:19:16PM +0100, Olivier Sallou wrote:
this is done in a patch debianpackaging, should
a écrit :
On Mon, Mar 21, 2011 at 12:38:05PM +0100, Olivier Sallou wrote:
Copyright issue is fixed (at least worarounded).
I can not find code which strips the problematic file from the orig
source tarball. This could be done in a get-orig-source target by
repackaging upstream tarball. Or did I
Thanks for your help at driving me for better/cleaner packaging
Olivier
Le 3/22/11 12:44 AM, Charles Plessy a écrit :
Le Mon, Mar 21, 2011 at 03:43:59PM +0100, Olivier Sallou a écrit :
I have created a get-orig-source that strips out the file, and a
patch 'debianpackaging' that updated
Hi,
I have updated gbrowse packaging.
I fixed licensing issuess: dropdown css are GNU GPL (copyright updated)
and I remove contrib directory from source via a get-orig-source target.
Contribs are not required for software.
Could you have a look at packaging for upload ?
Thanks
Olivier
--
I gonna move the man pages out of the page.
For the arch, there is a .so file generated in perl libs, thats why it
is dependent.
Regards
Olivier
Le 4/1/11 1:49 PM, Andreas Tille a écrit :
Hi Olivier,
On Fri, Apr 01, 2011 at 12:00:56PM +0200, Olivier Sallou wrote:
Could you have a look
The default web page access is given in man page. But I can add it in
README.
Regarding all links available in index page, they provide access to
many links, but those depends in fact on the install you made (
GBrowse provides many different possible installation types)
You can install
, you rename with ~dfsg ,
what is the meaning of dfsg?
That's all for me for the moment.
Thanks
Olivier
- Mail original -
De: Charles Plessy ple...@debian.org
À: Olivier Sallou olivier.sal...@irisa.fr
Cc: Debian Med Project List debian-med@lists.debian.org
Envoyé: Samedi 2 Avril 2011
Hi,
as requested by Charles, I added auto test step to rules file .
Tests are run in non-interactive way.
Olivier
Hi,
regarding Twitter, it is very network related, you register to a feed and
possibly forward to your followers. I am not sure this would finally
touch/ping the final user. Either you already know Debian(Med), and this
could be usefull as simple informational feed, or you don't know it and I
- Mail original -
De: Charles Plessy ple...@debian.org
À: Olivier Sallou olivier.sal...@irisa.fr, debian-med@lists.debian.org
Envoyé: Dimanche 10 Avril 2011 13:28:04
Objet: Uploading GBrowse to experimental ?
Dear Olivier,
as you probably have seen on the commit mailing list, I have made
, 2011 at 09:33:24AM +0200, Olivier Sallou wrote:
Hi Charles,
the script metadb is used for the user management. It creates a
new database (sqlite) if not already created. It is required for
some actions enabled by default at install.
I think we can remove it from post-install however. User
is
required at gbrowse-data install.
To test it, please reload patches as I updated them.
Olivier
Le 4/11/11 9:33 AM, Olivier Sallou a écrit :
Hi Charles,
the script metadb is used for the user management. It creates a new
database (sqlite) if not already created. It is required for some
Hi,
what do you mean by :
And, it may be time for your Debian Maintainer application ?
Olivier
Le 4/12/11 5:09 PM, Steffen Möller a écrit :
Hello,
On 04/12/2011 04:20 PM, Charles Plessy wrote:
Le Tue, Apr 12, 2011 at 02:22:50PM +0200, Olivier Sallou a écrit :
I have updated gbrowse
Hi,
I have sent a request to debian-newmaint list to become a Debian
maintainer (see attached).
could you advocate me to support my application?
Thanks
Olivier
Message original
Sujet: DM application of Olivier Sallou
Date : Wed, 13 Apr 2011 14:38:01 +0200
De :Olivier
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256
Hi,
I resent my application because my previous mail was not signed, as
expected.
This is my declaration of intent to become a Debian Maintainer
URL:http://wiki.debian.org/DebianMaintainer.
I have read the Social Contract, Debian Free Software
I see there is a Facebook page , but only with a description of the
project, did you created it?
In Facebook, you can fill events related to project (as Debian page), it
could be filled with events or general info
Not sure however, that info should be the same as on Twitter (do you
plan to post
Hi,
packages squizz and biomaj have been put in sid. This is not up-to-date
in debian-med tasks page.
I do not know if it is automatically updated via scripts or need manual
change.
Thanks
Olivier
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Hi,
is anyone using tomcat 6.0.32 (current one on sid) ?
I have an issue where my webapp context file in
Catalina/localhost/myapp.xml is not taken into account.
Only WEB-INF/web.xml context is used (though should be overriden by the
previous).
This used to work long time ago (and works on other
Hi,
this is indeed a bug. It is no blocking but I will give a patch new week.
We will remove it from shell script I think to create the pid file directly in
the program using conf data.
This pid file is just used to prevent dual updates on same banks.
Would you mind create a bug under
In the maven Jar creation step, a Manifest description should be present. Maybe
it refers a Manifest file instead of specifying its contents dynamically.
Either Manifest file is not present at all, or it is in src but not copied in
target dir (compilation copies only java classes, not other
Med Project List debian-med@lists.debian.org
Cc: Debian Java List debian-j...@lists.debian.org
Envoyé: Mardi 19 Avril 2011 18:12:28
Objet: Re: Help with maven based package needed (dcm4che)
Hi Olivier,
On Tue, Apr 19, 2011 at 06:00:16PM +0200, Olivier Sallou wrote:
In the maven Jar creation
Hi,
I have packaged biomaj-watcher, now that biomaj is in official repository.
(upstream source has been updated, it needs to be refreshed)
I tested with pbuilder and it looks fine.
It integrates some jar files as GWT2 is not packaged in Debian (and I am
not confident enough to do it now), as
Hi,
I have update my key to add the E usage flag. I have uploaded it to gpg
servers (keys.gnupg.net)
Regards
Olivier
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Date de renvoi :Fri, 22 Apr 2011 11:47:03 + (UTC)
De (renvoi) : debian-med@lists.debian.org
Date : Fri, 22 Apr 2011 13:46:47 +0200
De :Olivier Sallou olivier.sal...@irisa.fr
Pour : Debian Med Project List debian-med@lists.debian.org
Hi,
I have packaged biomaj-watcher, now
see answer below
Le 4/26/11 11:42 AM, Andreas Tille a écrit :
Hi Olivier,
On Fri, Apr 22, 2011 at 01:46:47PM +0200, Olivier Sallou wrote:
Hi,
I have packaged biomaj-watcher, now that biomaj is in official repository.
(upstream source has been updated, it needs to be refreshed)
You mean
Hi,
I have made my first patch for Biomaj, after it is uploaded in Debian repo.
Could someone please confirm, to help me doing the things correctly.
I have in Debian bugs 2 bug ids (1 bug, 1 wishlist).
I fixed the first with a new patch (quilt)
Second one impacts debian directory only (add a
Hi,
I see in tasks the ncbi Blast+ software, not packaged.
Has anyone started something? Or should I go for it ?
Olivier
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then the
original, so have fun. I'm not very good at reading the list so if you
are able to CC me on any messages that would be appreciated.
Cheers,
TIM
On Wed, 2011-04-27 at 14:53 +0200, Andreas Tille wrote:
Hi Olivier,
On Wed, Apr 27, 2011 at 02:35:55PM +0200, Olivier Sallou wrote:
Has
Hi,
I have updated the Biomaj package to fix 2 bugs and 1 wishlist.
It impacts debian files and adds a patch.
Would you mind uploading it (I do not have yet the maintainer status)
Thanks
Olivier
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-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package ncbi-blast-plus
dpkg-buildpackage: source version 2.2.25-1
dpkg-buildpackage: source changed by Olivier Sallou osal...@irisa.fr
dpkg-buildpackage: host architecture amd64
dpkg-source --before-build ncbi
gotcha!
I used existing dir in svn tree for ncbi-blast-plus, did not think that
all svn stuff was not set.
Thanks
Le 4/29/11 1:15 PM, Steffen Möller a écrit :
Have you set
svn propset mergeWithUpstream 1 debian
?
Cheers,
Steffen
On 04/29/2011 11:28 AM, Olivier Sallou wrote:
Hi,
I
Hi,
thanks for your reviews.
I won't have time to progress in next 2 weeks.
I will refresh svn and have a look at this time
For boost, I did not know what was exactly required, I just saw that it was
required for compil.
For zlib etc... included in code, I think we should keep the copies
Hi Andreas,
do you think you will have some time to check biomaj-watcher?
Thanks
Olivier
Hi,
I need a sponsor to push biomaj-watcher to FTP master.
biomaj-watcher is the graphical front-end of Biomaj.
Andreas did the job for Biomaj but will lack of time for this one.
Thanks
Olivier
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thanks
Andreas already had a look and I made several changes according to his
comments.
If you see others...
Olivier
Le 5/9/11 12:56 PM, Steffen Möller a écrit :
Hi Olivier,
On 05/09/2011 09:31 AM, Olivier Sallou wrote:
Hi,
I need a sponsor to push biomaj-watcher to FTP master.
biomaj
Hi,
for info I could make a few changes ot blast+ packaging:
- rename package to ncbi-blast+ (instead of -plus).
- create a ncbi-blast+-legacy which adds some scripts for legacy blast
that calls the blasT_legacy perl script to keep available previous
command line (shell scripts in
ok for me but this will have impact on get-orig-source.
and I am not familiar with the debian build commands with git, this will
be a way to train...
Olivier
Le 5/12/11 1:58 AM, Charles Plessy a écrit :
om svn at SourceForge to git at GitHub. While we expect
the transition to fairly painless,
Hi,
I see that Gbrowse failed to build on Ubuntu.
The following packages have unmet dependencies:
libhttp-daemon-perl : Depends: libhttp-message-perl but it is not going to be
installed
Depends: libhttp-date-perl but it is not going to be
installed
at 09:58:37AM +0200, Olivier Sallou a écrit :
I see that Gbrowse failed to build on Ubuntu.
The following packages have unmet dependencies:
libhttp-daemon-perl : Depends: libhttp-message-perl but it is not going to
be installed
Depends: libhttp-date-perl
Hi Steffen,
I have a question regarding biomaj-watcher package.
The package references the same ITP than biomaj. As biomaj has already
been uploaded, ITP has been closed (per the Closes in changelog).
Should biomaj-watcher reference a new ITP or is it ok to keep the same
as biomaj and
Hi,
following your remarks, I am looking at adding binary dependencies source code.
However, after a look, source dependency is quite huge (GWT/SmartGWT, others
are fine).
I wonder if I really need to add source code for those in my package, or if a
reference to source code URL would be
Hi,
are you talking of blast or blast+ ?
Regarding features, I do not see what you mean by xalan feature, or uuid
(sounds like java packages).
Olivier
- Mail original -
De: George Marselis geo...@marsel.is
À: Debian Med Project List debian-med@lists.debian.org
Envoyé: Dimanche 29
hi,
after updating to your code, there is a compil (configure) error at
build time:
configure: error: Do not know how to build MT-safe with compiler
/usr/bin/g++
Maybe a missing dependency, do you have any idea?
Olivier
Le 5/29/11 6:12 PM, Aaron M. Ucko a écrit :
Olivier Sallou olivier.sal
Hi,
I have 2 questions on ubuntu backport on debian-med launchpad:
1) can we put a package, simply to get it available on current ubuntu
version? (though deb package will be available on next ubuntu release).
If yes, how do we manage it from version point of view ? If debian
package has version
your c++/config.log, which should shed
more light on it. nbsp;Thanks!
-- Sent from my Palm Pre
On May 30, 2011 3:44, Olivier Sallou lt;olivier.sal...@irisa.frgt; wrote:
hi,
after updating to your code, there is a compil (configure) error at
build time:
configure: error: Do not know how
-source: internal error: add_directory() only handles directories
dpkg-buildpackage: error: dpkg-source -b ncbi-blast-2.2.25+-src gave
error exit status 29
Olivier
Le 5/30/11 7:23 PM, Aaron M. Ucko a écrit :
Olivier Sallou olivier.sal...@irisa.fr writes:
configure: error: Do not know how to build MT
Hi,
I have a question regarding inclusion of source code of other packages.
In biomaj watcher, I need to include some binaries due to missing gwt2 package
(and task too hard for the moment for me to package it).
As such, with their license, source code must be available.
My concern is
to PPA this summer.
Thanks
Olivier
- Mail original -
De: Steffen Möller steffen_moel...@gmx.de
À: Olivier Sallou olivier.sal...@irisa.fr
Envoyé: Vendredi 3 Juin 2011 02:43:34
Objet: Fwd: Re: inclusion of binaries+source in package question
Good news. Sorry for my wrong advise
Hi,
I tried to rename one dir (ncbi-blast-plus to ncbi-blast+) with svn rename.
On commit I have an error:
#svn commit -m move ncbi-blast-plus to ncbi-blast+ ncbi-blast+
Adding ncbi-blast+
Adding ncbi-blast+/trunk
svn: Commit failed (details follow):
svn: Can't create directory
, Thorsten Alteholz a écrit :
Hi Olivier,
On Mon, 6 Jun 2011, Olivier Sallou wrote:
I tried to rename one dir (ncbi-blast-plus to ncbi-blast+) with svn
rename.
On commit I have an error:
can you please check whether you try to commit to alioth.debian.org or
svn.debian.org? In case it is alioth, you
Hi,
the package ncbi-blast+ should be ready for a first upload.
Aaron made some modifications on my first packaging, and I retested it.
I renamed the directory in svn tree (trunk/packages) to ncbi-blast+
instead of ncbi-blast-plus.
Can someone have a look and upload to ftp master ?
Thanks
HI,
I have an other question to put a package on launchpad.
My package is already on Ubuntu, but for next release (oneiric).
To make it available on current version, I tried to repackage it using a
different version (-0).
However, when using dput, I have an email error telling me that orig
file
option -sd was what I needed,
thanks
Olivier
Le 6/7/11 12:33 PM, Charles Plessy a écrit :
Le Tue, Jun 07, 2011 at 11:23:45AM +0200, Olivier Sallou a écrit :
To make it available on current version, I tried to repackage it using a
different version (-0). However, when using dput, I have
Hi Charles,
I see your are the maintainer of bioperl, do you plan to go to version
1.6.901 ?
This version is available on CPAN, and is required to further updates of
gbrowse
Thanks
Olivier
--
gpg key id: 4096R/326D8438 (pgp.mit.edu)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB
Hi,
in my gbrowse packaging, after upload to unstable, I see a circular
dependency error.
It occurs on libwww-perl (which contains circular dependency).
Are circular dependencies an issue?
I also have an other error on perlapi shown as unknown (see below).
I do not specify in my control file any
Package: wnpp
Severity: wishlist
X-Debbugs-CC:debian-med@lists.debian.org
Language: Perl
Homepage: http://search.cpan.org/dist/Math-VecStat/
Description: This package offers some basic statistics on vectors
(min,max,average,)
Dependencies: None
Upstream author: Andrea Spinelli
--
Olivier
/intro/circular_approach ---
this makes Circos ideal for exploring relationships between objects or
positions
Upstream author: Martin Krzywinski mart...@bcgsc.ca
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R
field is missing).
Regarding the package itself: Do you consider it worth mentioning on
our tasks page? The relation to Bi
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (pgp.mit.edu)
Key fingerprint
tools then apply
tools patches
So, to avoid this stuff to get orig.tar.gz, if you want me to make it
available, please let me know.
thanks
Olivier
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438
Hi,
there is an issue with one of my packages with the displayed description.
http://packages.debian.org/sid/biomaj
It displays:
Binary utilities supporting TI's MSP430 targetsPackage: biomaj (1.1.0-3)
The programs in this package are used to manipulate binary and object files
that
Hi,
sorry to ping again, but I got no answer from my previous mail to get a
sponsor to upload/check Circos package.
I am not in a hurry to do so, but I'd like to know that someone will take this
in charge.
Thanks
Olivier
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu
can make the orig.tar.gz I created
from upstream source available for download so that you get it.
Olivier
Le 7/13/11 9:08 AM, Andreas Tille a écrit :
On Wed, Jul 13, 2011 at 08:58:50AM +0200, Olivier Sallou wrote:
sorry to ping again, but I got no answer from my previous mail to get a
sponsor
I will have a look for the get-orig-source to try to recreate the
complete stuff automatically.
This will be quite difficult I think but I will try.
Let's wait for the moment.
I will let you know
Thanks
Olivier
Le 7/13/11 10:08 AM, Andreas Tille a écrit :
d s/0.54\.1-1
--
Olivier Sallou
7/13/11 10:08 AM, Andreas Tille a écrit :
On Wed, Jul 13, 2011 at 09:12:38AM +0200, Olivier Sallou wrote:
as I said in my previous email, upstream source is quite a mess.
One need to mix several packages (not with the same version) and apply
patches which are in fact some tar files containing
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