[med-svn] [Git][med-team/lefse] Pushed new tag debian/1.0.8-3

Andreas Tille pushed new tag debian/1.0.8-3 at Debian Med / lefse -- View it on GitLab: https://salsa.debian.org/med-team/lefse/tree/debian/1.0.8-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bcbio][master] Update TODO - cthreadpool accepted, viennarna progressed

Steffen Möller pushed to branch master at Debian Med / bcbio Commits: 1e5c05c4 by Steffen Möller at 2019-09-11T21:50:04Z Update TODO - cthreadpool accepted, viennarna progressed - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO

[med-svn] [Git][med-team/lefse][master] 3 commits: Depends: python3-matplotlib

Andreas Tille pushed to branch master at Debian Med / lefse Commits: 9e3a1c26 by Andreas Tille at 2019-09-11T19:08:26Z Depends: python3-matplotlib - - - - - e83d8645 by Andreas Tille at 2019-09-11T19:15:44Z Fix permissions - - - - - e6add0b4 by Andreas Tille at 2019-09-11T19:16:14Z Upload to

[med-svn] [Git][med-team/phyx][master] 4 commits: Add changelog entry

Andreas Tille pushed to branch master at Debian Med / phyx Commits: 8ab2c63e by Andreas Tille at 2019-09-11T19:21:16Z Add changelog entry - - - - - 54631f6a by Andreas Tille at 2019-09-11T19:21:51Z debhelper-compat 12 - - - - - aae7183c by Andreas Tille at 2019-09-11T19:21:56Z

[med-svn] [Git][med-team/qiime][master] Steffen starts work on DADA2 R BioC package

Steffen Möller pushed to branch master at Debian Med / qiime Commits: cca9ab5a by Steffen Möller at 2019-09-11T20:46:27Z Steffen starts work on DADA2 R BioC package - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO

[med-svn] [Git][med-team/qiime][master] Update TODO - data2 has dependency on rcppparallel

Steffen Möller pushed to branch master at Debian Med / qiime Commits: f08076a6 by Steffen Möller at 2019-09-11T21:40:27Z Update TODO - data2 has dependency on rcppparallel - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO

[med-svn] [Git][med-team/phyx] Pushed new tag debian/0.999+ds-2

Andreas Tille pushed new tag debian/0.999+ds-2 at Debian Med / phyx -- View it on GitLab: https://salsa.debian.org/med-team/phyx/tree/debian/0.999+ds-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/qiime][master] Changes in d/TODO

Liubov Chuprikova pushed to branch master at Debian Med / qiime Commits: 914f2e98 by Liubov Chuprikova at 2019-09-11T20:16:07Z Changes in d/TODO - - - - - 1 changed file: - debian/TODO Changes: = debian/TODO = @@

[med-svn] [Git][med-team/simka][master] Fix linking error

Shayan Doust pushed to branch master at Debian Med / simka Commits: b5d5ae64 by Shayan Doust at 2019-09-11T22:22:45Z Fix linking error Template functions must be entirely written in header but gatb-core has worked around this by cmake-generated templates. Hard-code some gatb-core variables.

[med-svn] [Git][med-team/phyx][master] Install Phyx_Gui

Andreas Tille pushed to branch master at Debian Med / phyx Commits: 14cbc52c by Andreas Tille at 2019-09-11T20:33:09Z Install Phyx_Gui - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes: = debian/changelog

[med-svn] [Git][med-team/emperor][master] Update Files-Excluded

Liubov Chuprikova pushed to branch master at Debian Med / emperor Commits: a50da268 by Liubov Chuprikova at 2019-09-11T21:06:55Z Update Files-Excluded - - - - - 1 changed file: - debian/copyright Changes: = debian/copyright

[med-svn] [Git][med-team/simka][master] 2 commits: Add new build-depends (libboost-dev)

Shayan Doust pushed to branch master at Debian Med / simka Commits: f1d6d0f6 by Shayan Doust at 2019-09-11T23:59:41Z Add new build-depends (libboost-dev) - - - - - 7442346c by Shayan Doust at 2019-09-12T00:00:28Z Standards-version 4.4.0 - - - - - 1 changed file: - debian/control

[med-svn] [Git][med-team/fastqtl][master] 6 commits: pass cross tools to make

Andreas Tille pushed to branch master at Debian Med / fastqtl Commits: 36297498 by Andreas Tille at 2019-09-09T12:07:55Z pass cross tools to make - - - - - d2c7fd26 by Andreas Tille at 2019-09-09T12:08:08Z debhelper-compat 12 - - - - - f5609344 by Andreas Tille at 2019-09-09T12:08:12Z

[med-svn] [Git][med-team/fastqtl] Pushed new tag debian/2.184+dfsg-7

Andreas Tille pushed new tag debian/2.184+dfsg-7 at Debian Med / fastqtl -- View it on GitLab: https://salsa.debian.org/med-team/fastqtl/tree/debian/2.184+dfsg-7 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/grabix][master] Upload to unstable

Andreas Tille pushed to branch master at Debian Med / grabix Commits: cb3ec61c by Andreas Tille at 2019-09-11T07:12:42Z Upload to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog =

[med-svn] [Git][med-team/grabix] Pushed new tag debian/0.1.7-2

Andreas Tille pushed new tag debian/0.1.7-2 at Debian Med / grabix -- View it on GitLab: https://salsa.debian.org/med-team/grabix/tree/debian/0.1.7-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/grabix][master] 6 commits: Use 2to3 to port to Python3

Andreas Tille pushed to branch master at Debian Med / grabix Commits: 959d167e by Andreas Tille at 2019-09-10T14:51:56Z Use 2to3 to port to Python3 - - - - - 31bb7457 by Andreas Tille at 2019-09-10T14:52:18Z Build-Depends: s/python/python3/ - - - - - 16e27577 by Andreas Tille at

[med-svn] [Git][med-team/lefse][master] Install lefse.py

Andreas Tille pushed to branch master at Debian Med / lefse Commits: 83bd6892 by Andreas Tille at 2019-09-11T07:29:17Z Install lefse.py - - - - - 1 changed file: - debian/rules Changes: = debian/rules = @@ -8,7 +8,8

[med-svn] [Git][med-team/ngs-sdk][pristine-tar] pristine-tar data for ngs-sdk_2.10.0.orig.tar.gz

Olivier Sallou pushed to branch pristine-tar at Debian Med / ngs-sdk Commits: d1f436e6 by Olivier Sallou at 2019-09-11T07:27:29Z pristine-tar data for ngs-sdk_2.10.0.orig.tar.gz - - - - - 2 changed files: - + ngs-sdk_2.10.0.orig.tar.gz.delta - + ngs-sdk_2.10.0.orig.tar.gz.id Changes:

[med-svn] [Git][med-team/ngs-sdk] Pushed new tag upstream/2.10.0

Olivier Sallou pushed new tag upstream/2.10.0 at Debian Med / ngs-sdk -- View it on GitLab: https://salsa.debian.org/med-team/ngs-sdk/tree/upstream/2.10.0 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ngs-sdk] Pushed new tag debian/2.10.0-1

Olivier Sallou pushed new tag debian/2.10.0-1 at Debian Med / ngs-sdk -- View it on GitLab: https://salsa.debian.org/med-team/ngs-sdk/tree/debian/2.10.0-1 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/paleomix] Pushed new tag upstream/1.2.13.4

Andreas Tille pushed new tag upstream/1.2.13.4 at Debian Med / paleomix -- View it on GitLab: https://salsa.debian.org/med-team/paleomix/tree/upstream/1.2.13.4 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/paleomix][master] 7 commits: New upstream version 1.2.13.4

Andreas Tille pushed to branch master at Debian Med / paleomix Commits: 95b58c29 by Andreas Tille at 2019-09-11T09:21:12Z New upstream version 1.2.13.4 - - - - - 30832404 by Andreas Tille at 2019-09-11T09:21:12Z New upstream version - - - - - 7358da03 by Andreas Tille at 2019-09-11T09:21:27Z

[med-svn] [Git][med-team/paleomix][upstream] New upstream version 1.2.13.4

Andreas Tille pushed to branch upstream at Debian Med / paleomix Commits: 95b58c29 by Andreas Tille at 2019-09-11T09:21:12Z New upstream version 1.2.13.4 - - - - - 4 changed files: - CHANGES.md - docs/phylo_pipeline/usage.rst - paleomix/nodes/picard.py -

[med-svn] [Git][med-team/paleomix][pristine-tar] pristine-tar data for paleomix_1.2.13.4.orig.tar.gz

Andreas Tille pushed to branch pristine-tar at Debian Med / paleomix Commits: 419a6506 by Andreas Tille at 2019-09-11T09:21:27Z pristine-tar data for paleomix_1.2.13.4.orig.tar.gz - - - - - 2 changed files: - + paleomix_1.2.13.4.orig.tar.gz.delta - + paleomix_1.2.13.4.orig.tar.gz.id

[med-svn] [Git][med-team/metabit][upstream] New upstream version 0.0+git20170725.24cb3ee+dfsg

Andreas Tille pushed to branch upstream at Debian Med / metabit Commits: 77692713 by Andreas Tille at 2019-09-11T08:43:49Z New upstream version 0.0+git20170725.24cb3ee+dfsg - - - - - 2 changed files: - + .gitignore - metaBIT.py Changes: = .gitignore

[med-svn] [Git][med-team/metabit][master] 13 commits: Use git mode in watch file

Andreas Tille pushed to branch master at Debian Med / metabit Commits: ab3427bf by Andreas Tille at 2019-09-11T08:39:21Z Use git mode in watch file - - - - - 237d1f95 by Andreas Tille at 2019-09-11T08:40:52Z Drop get-orig-source, use +dfsg suffix - - - - - fa3649ec by Andreas Tille at

[med-svn] [Git][med-team/metabit] Pushed new tag upstream/0.0+git20170725.24cb3ee+dfsg

Andreas Tille pushed new tag upstream/0.0+git20170725.24cb3ee+dfsg at Debian Med / metabit -- View it on GitLab: https://salsa.debian.org/med-team/metabit/tree/upstream/0.0+git20170725.24cb3ee+dfsg You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/metabit][pristine-tar] pristine-tar data for metabit_0.0+git20170725.24cb3ee+dfsg.orig.tar.xz

Andreas Tille pushed to branch pristine-tar at Debian Med / metabit Commits: fad9be4f by Andreas Tille at 2019-09-11T08:43:59Z pristine-tar data for metabit_0.0+git20170725.24cb3ee+dfsg.orig.tar.xz - - - - - 2 changed files: - + metabit_0.0+git20170725.24cb3ee+dfsg.orig.tar.xz.delta - +

[med-svn] [Git][med-team/metabit] Pushed new tag debian/0.0+git20170725.24cb3ee+dfsg-1

Andreas Tille pushed new tag debian/0.0+git20170725.24cb3ee+dfsg-1 at Debian Med / metabit -- View it on GitLab: https://salsa.debian.org/med-team/metabit/tree/debian/0.0+git20170725.24cb3ee+dfsg-1 You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/ngs-sdk] Pushed new tag debian/2.10.0-2

Andreas Tille pushed new tag debian/2.10.0-2 at Debian Med / ngs-sdk -- View it on GitLab: https://salsa.debian.org/med-team/ngs-sdk/tree/debian/2.10.0-2 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ngs-sdk][master] 5 commits: Drop Python2 support

Andreas Tille pushed to branch master at Debian Med / ngs-sdk Commits: 451a0670 by Andreas Tille at 2019-09-11T09:08:26Z Drop Python2 support - - - - - 6bbd5c76 by Andreas Tille at 2019-09-11T09:10:08Z debhelper-compat 12 - - - - - 5cbd0aa9 by Andreas Tille at 2019-09-11T09:10:23Z

[med-svn] [Git][med-team/sleepyhead][master] 4 commits: Drop libquazip5-headers from Build-Depends

Andreas Tille pushed to branch master at Debian Med / sleepyhead Commits: c1fffb2b by Andreas Tille at 2019-09-11T12:00:30Z Drop libquazip5-headers from Build-Depends - - - - - 7cbf6b5a by Andreas Tille at 2019-09-11T12:00:53Z debhelper-compat 12 - - - - - 9a6692df by Andreas Tille at

[med-svn] [Git][med-team/ncbi-blastplus] Pushed new tag debian/2.9.0-1

Olivier Sallou pushed new tag debian/2.9.0-1 at Debian Med / ncbi-blastplus -- View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/tree/debian/2.9.0-1 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ncbi-blastplus][upstream] New upstream version 2.9.0

Olivier Sallou pushed to branch upstream at Debian Med / ncbi-blastplus Commits: 777af403 by Olivier Sallou at 2019-09-11T07:42:44Z New upstream version 2.9.0 - - - - - 23 changed files: - c++/compilers/unix/GCC.sh - c++/compilers/vs2015/datatool.bat - c++/compilers/vs2015/install.sh -

[med-svn] [Git][med-team/ncbi-blastplus][master] 8 commits: New upstream version 2.9.0

Olivier Sallou pushed to branch master at Debian Med / ncbi-blastplus Commits: 777af403 by Olivier Sallou at 2019-09-11T07:42:44Z New upstream version 2.9.0 - - - - - 980df12c by Olivier Sallou at 2019-09-11T07:44:28Z Update upstream source from tag upstream/2.9.0 Update to upstream version

[med-svn] [Git][med-team/sleepyhead] Pushed new tag debian/1.0.0-beta-2+dfsg-7

Andreas Tille pushed new tag debian/1.0.0-beta-2+dfsg-7 at Debian Med / sleepyhead -- View it on GitLab: https://salsa.debian.org/med-team/sleepyhead/tree/debian/1.0.0-beta-2+dfsg-7 You're receiving this email because of your account on salsa.debian.org.

[med-svn] [Git][med-team/pyqi] Pushed new tag debian/0.3.2+dfsg-4

Andreas Tille pushed new tag debian/0.3.2+dfsg-4 at Debian Med / pyqi -- View it on GitLab: https://salsa.debian.org/med-team/pyqi/tree/debian/0.3.2+dfsg-4 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ncbi-blastplus] Pushed new tag upstream/2.9.0

Olivier Sallou pushed new tag upstream/2.9.0 at Debian Med / ncbi-blastplus -- View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/tree/upstream/2.9.0 You're receiving this email because of your account on salsa.debian.org. ___

[med-svn] [Git][med-team/ncbi-blastplus][pristine-tar] pristine-tar data for ncbi-blast+_2.9.0.orig.tar.gz

Olivier Sallou pushed to branch pristine-tar at Debian Med / ncbi-blastplus Commits: 6fc6b3ab by Olivier Sallou at 2019-09-11T07:44:28Z pristine-tar data for ncbi-blast+_2.9.0.orig.tar.gz - - - - - 2 changed files: - + ncbi-blast+_2.9.0.orig.tar.gz.delta - +

[med-svn] [Git][med-team/pixelmed][master] 6 commits: Removed the BUILDDATE file from pixelmed.jar to make the build reproducible

Emmanuel Bourg pushed to branch master at Debian Med / pixelmed Commits: 595b4ff8 by Emmanuel Bourg at 2019-09-11T10:48:58Z Removed the BUILDDATE file from pixelmed.jar to make the build reproducible - - - - - c2a16ee3 by Emmanuel Bourg at 2019-09-11T10:49:22Z Fixed a typo in a patch

[med-svn] [Git][med-team/lefse][master] Include an autopkgtest

Shayan Doust pushed to branch master at Debian Med / lefse Commits: 3295faf2 by Shayan Doust at 2019-09-11T14:19:31Z Include an autopkgtest Simple comparative tests to see if installed files return an expected output - - - - - 2 changed files: - + debian/tests/control - +

[med-svn] [Git][med-team/cycle][master] 3 commits: Fix Python3 conversion

Andreas Tille pushed to branch master at Debian Med / cycle Commits: f8f5280f by Andreas Tille at 2019-09-11T13:33:04Z Fix Python3 conversion - - - - - e74b3641 by Andreas Tille at 2019-09-11T13:41:17Z Fix exception - - - - - 52df64df by Andreas Tille at 2019-09-11T13:47:31Z autopep8 - - -

[med-svn] [Git][med-team/lefse][master] Append to changelog

Shayan Doust pushed to branch master at Debian Med / lefse Commits: dcb12077 by Shayan Doust at 2019-09-11T14:24:21Z Append to changelog - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog = @@

[med-svn] [Git][med-team/lefse][master] Some unit test refinements

Shayan Doust pushed to branch master at Debian Med / lefse Commits: 6883422d by Shayan Doust at 2019-09-11T16:22:58Z Some unit test refinements - - - - - 1 changed file: - debian/tests/run-unit-test Changes: = debian/tests/run-unit-test

[med-svn] [Git][med-team/lefse][master] 2 commits: DEP3

Andreas Tille pushed to branch master at Debian Med / lefse Commits: c5b0fcc9 by Andreas Tille at 2019-09-11T15:45:13Z DEP3 - - - - - 228c5c0e by Andreas Tille at 2019-09-11T15:46:22Z Spelling - - - - - 4 changed files: - debian/mans/plot_features.1 - debian/mans/plot_res.1 -