0 for me
Kenneth
On Tue, Jan 21, 2014 at 05:37:01PM +, Miller, Mark wrote:
+1
mark
From: Amila Jayasekara [mailto:thejaka.am...@gmail.com]
Sent: Tuesday, January 21, 2014 7:56 AM
To: dev
Subject: Re: [VOTE] Convert from SVN to GIT
+1.
Thanks
Amila
On Tue, Jan 21, 2014 at
Posting this also to dev@airavata, at Marlon's request.
On 7/3/14, 1:39 PM, K Yoshimoto wrote:
Another question. I was able to create a project and experiment,
then launch the experiment. It was EXECUTING, but is now SUSPENDED.
How should the gateway developer investigate the cause
Are there methods in the API for creating working dirs on the
compute resource, staging input data, and running submit wrapper
scripts?
I'm looking at:
https://github.com/SciGaP/Airavata-PHP-Client-Samples/blob/master/client-samples/README-PHP-CLI-Examples.txt
and browsing through:
). These are new (not yet in the README), may be missing some
examples.
Marlon
On 7/3/14, 3:45 PM, K Yoshimoto wrote:
Are there methods in the API for creating working dirs on the
compute resource, staging input data, and running submit wrapper
scripts?
I'm looking at:
https://github.com/SciGaP
I did a git pull, and add-compute-resource.php does not seem
to be there anymore. Should it still be available?
On Thu, Jul 03, 2014 at 01:34:18PM -0700, K Yoshimoto wrote:
Thanks, Marlon and Suresh. I'll poke through the app catalog api
and try out the examples in the new README next week
, 2014, at 4:25 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I did a git pull, and add-compute-resource.php does not seem
to be there anymore. Should it still be available?
On Thu, Jul 03, 2014 at 01:34:18PM -0700, K Yoshimoto wrote:
Thanks, Marlon and Suresh. I'll poke through the app
=true.
Long story short, release artifacts are published to maven central, so
building a module will pull the artifacts from maven central repo -
http://search.maven.org/#search%7Cga%7C1%7Capache%20airavata
Suresh
On Jul 9, 2014, at 7:38 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Another
?
Kenneth
On Fri, Jul 18, 2014 at 01:28:00PM -0700, K Yoshimoto wrote:
I can registerApplicationModule.php now. registerApplicationInterface.php
fails, even when I comment out the disable(). What is the proper way
to put in a new Application? Is there a way to specify an application
Great info! How do I register a host as a non-hpc resource?
I didn't see an obvious variable name in the
registerComputeResource.php example script.
On Wed, Jul 23, 2014 at 01:56:51PM -0400, Lahiru Gunathilake wrote:
On Jul 23, 2014, at 1:49 PM, K Yoshimoto wrote:
Hi, just following
I tried to modify some of the php sample scripts to create
an experiment that runs 'pwd'. I might have messed something
up along the way. I did a launchExperiment yesterday, and it
has not progressed from LAUNCHED:
php getExperimentStatus.php pwdtest_e08d60fb-62e9-4d54-bfe4-8688d894585d
(1406155998504)
[userName]=
string(7) kenneth
[name]=
string(7) pwdtest
[description]=
NULL
[applicationId]=
NULL
[applicationVersion]=
NULL
Thanks
Raminder
On Jul 24, 2014, at 2:36 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I took a look through
need additional jars.
Marlon
On 7/30/14, 4:05 PM, K Yoshimoto wrote:
I wanted to play a bit more with the existing java client examples,
in parallel with the new ones that are being written. I tried
building them but got an error about missing files.
This was run from airavata-api
staff 704373 Jul 30 16:11
airavata-client-api-0.14-SNAPSHOT.jar
-rw-r--r-- 1 mpierce staff 206 Jul 30 16:11 _maven.repositories
-rw-r--r-- 1 mpierce staff 231 Jul 30 16:49 resolver-status.properties
On 7/30/14, 4:45 PM, K Yoshimoto wrote:
I get a different error now:
java
checks.
On Wed, Aug 13, 2014 at 05:21:20PM -0400, Marlon Pierce wrote:
Thanks, Kenneth. Are you doing something like this in NSG?
Marlon
On 8/13/14, 4:03 PM, K Yoshimoto wrote:
You might want to not throw an exception. Instead, output
any stderr/stdout if in debug mode. To check for success
How does this get accessed? Will it come with the clone of
the PHP-Reference-Gateway?
Thanks,
Kenneth
On Fri, Sep 19, 2014 at 03:34:11PM -0400, Marlon Pierce wrote:
Thanks, Eroma. While we are upgrading XBaya, the PHP Reference Gateway
is the best user interface for playing with Airavata
I'm getting an error when trying to startup an airavata server:
airavata-server.sh: 86: airavata-server.sh: Syntax error: ( unexpected
(expecting done)
the failure.
Thanks
Raminder
On Oct 10, 2014, at 7:01 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I'm getting an error when trying to startup an airavata server:
airavata-server.sh: 86: airavata-server.sh: Syntax error: ( unexpected
(expecting done)
by law.
On Sat, Oct 11, 2014 at 2:23 PM, K Yoshimoto kenn...@sdsc.edu wrote:
It looks like this line:
f_split=(${f//_/ });
apache-airavata-server-0.14-SNAPSHOT/bin$ sh airavata-server.sh
Kenneth--
What OS are you using?
Marlon
On 10/11/14, 2:23 PM, K Yoshimoto wrote:
It looks like this line:
f_split=(${f//_/ });
apache-airavata-server-0.14-SNAPSHOT/bin$ sh airavata-server.sh
:05 AM, Marlon Pierce marpi...@iu.edu wrote:
Hi Kenneth--
What OS are you using?
Marlon
On 10/11/14, 2:23 PM, K Yoshimoto wrote:
It looks like this line:
f_split=(${f//_/ });
apache-airavata-server-0.14-SNAPSHOT/bin$ sh
sh ./airavata-server.sh
On Tue, Oct 14, 2014 at 04:20:13PM -0400, Saminda Wijeratne wrote:
Just curious, are you starting the server like,
$ sh airavata-server.sh
or
$ ./airavata-server.sh
On Tue, Oct 14, 2014 at 1:55 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Yes, something
, Oct 14, 2014 at 6:55 PM, K Yoshimoto kenn...@sdsc.edu wrote:
sh ./airavata-server.sh
On Tue, Oct 14, 2014 at 04:20:13PM -0400, Saminda Wijeratne wrote:
Just curious, are you starting the server like,
$ sh airavata-server.sh
or
$ ./airavata-server.sh
On Tue
: ( unexpected (expecting fi)
sgg@sgg-OptiPlex-990:/usr/local/zookeeper/zookeeper-3.4.6/bin$
./zkServer.sh start
JMX enabled by default
Using config: /usr/local/zookeeper/zookeeper-3.4.6/bin/../conf/zoo.cfg
Starting zookeeper ... STARTED
On Tue, Oct 14, 2014 at 7:08 PM, K Yoshimoto kenn
I'm playing with airavata 0.14. I am going through some of the
quickstart tutorials:
http://airavata.apache.org/documentation/quickstart-tutorials.html
I'm at the step of firing up xbaya-gui, but I'm not seeing
an obvious release distribution for it. Is it somewhere
else in the tree? I was
them with the
0.14 release.
Shameera is close to bring these tutorials back online, some discussion here
- http://markmail.org/thread/6dtvhd7posjosnvv
Suresh
On Oct 15, 2014, at 3:34 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I'm playing with airavata 0.14. I am going through some
running org.apache.airavata.xbaya.XBaya class through an IDE.
Hope this helps.
Thanks!
Ishara
On Wed, Oct 15, 2014 at 4:03 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Thanks, Suresh. I'll keep an eye on the dev list to see when
things are more up-to-date. If you notice things are ready
XBayaGUI refers to the
missing type ErrorWindow
at org.apache.airavata.xbaya.XBaya.init(XBaya.java:56)
at org.apache.airavata.xbaya.XBaya.main(XBaya.java:270)
On Thu, Oct 16, 2014 at 09:49:47AM -0700, K Yoshimoto wrote:
Thanks, Ishara. I'll give it a try.
Kenneth
On Thu
. Therefore at present XBaya GUI can't be started
by extracting XBaya GUI archive. Instead the GUI client is started by
directly running org.apache.airavata.xbaya.XBaya class through an IDE.
Hope this helps.
Thanks!
Ishara
On Wed, Oct 15, 2014 at 4:03 PM, K Yoshimoto kenn...@sdsc.edu wrote
any issue down the path.
Thanks,
Shameera.
On Thu, Oct 23, 2014 at 3:46 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Hi,
I am trying to start up the XBaya GUI from Eclipse, but get
an error about missing type ErrorWindow. Has anyone seen this?
Where is ErrorWindow supposed to come
]
On Thu, Oct 23, 2014 at 01:26:57PM -0700, K Yoshimoto wrote:
Shameera,
Thanks for the info. I did not do the mvn eclipse:eclipse.
I'll update my repo, then do mvn eclipse:eclipse and delete/load
XBaya. I'll update if it works or if I run into something else.
Kenneth
On Thu
in the Libraries tab
Thanks,
Shameera.
On Thu, Oct 23, 2014 at 5:45 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I did
git pull
mvn clean install
mvn eclipse:clean
mvn eclipse:eclipse
I am getting an error when trying to run XBaya from Eclipse:
The project: airavata-workflow-model-core
) and mvn eclipse:eclipse (Added jar to
the project classpath). not sure why that is not in classpath.
Yes, that warning can be ignored.
Thanks,
Shameera.
On Fri, Oct 24, 2014 at 7:07 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Thanks for the hints, Shameera.
I'm not seeing red libraries
Could someone clarify how rabbitmq is started? Does this need
to happen before starting airavata-server.sh? If rabbitmq is
installed separately from the airavata install, what are the
install and config steps for that?
Thanks,
Kenneth
On Wed, Nov 05, 2014 at 03:37:29PM +0100, SmashRod Alfredo
I've been playing with the Python API. I can registerApplicationDeployment
registerApplicationInterface, registerApplicationModule. I am
trying to createExperiment, but when I launch, I either get an
internal error on the server side, or it complains that it can't
figure out application type,
As long as there is the option (and good install and config info)
for a locally installed service, I think it's okay to have
a hosted service as a default.
On Thu, Nov 13, 2014 at 11:59:04AM -0500, Suresh Marru wrote:
Hi All,
As we get ready for the 0.14 release, one thing which always comes
Any thoughts on correctly setting execution type?
Does anyone want more detailed output?
Kenneth
On Wed, Nov 12, 2014 at 03:36:01PM -0800, K Yoshimoto wrote:
I've been playing with the Python API. I can registerApplicationDeployment
registerApplicationInterface, registerApplicationModule
/scigap/javaclient/airavata/airavata-api/thrift-interface-descriptions/gen-py/apache/airavata/api$
Lahiru
On Wed, Nov 12, 2014 at 6:36 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I've been playing with the Python API. I can registerApplicationDeployment
registerApplicationInterface
, 2014 at 10:18:50AM -0800, K Yoshimoto wrote:
Outputs are inline below. I think I need to somehow specify the
execution type in one of the steps. Not sure which step that is...
On Wed, Nov 19, 2014 at 12:51:05PM -0500, Lahiru Gunathilake wrote:
Hi Kennath,
Yes you have to give
Sounds like some very useful examples have been added to
the distribution. What is the status of the RC? Is it
stable enough for me to try some things, or should I wait
a bit?
On Wed, Nov 26, 2014 at 08:49:45AM -0500, Marlon Pierce wrote:
+1 for Shameera
On 11/26/14, 3:06 AM, Shameera
does JOB_DESCRIPTION get input into the experiment?
Kenneth
On Fri, Jan 16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
Is there a difference in the experiments that get created
through xbaya workflow creation and through commandline
createExperiment? I can clone and run the xbaya
Raminder
On Jan 21, 2015, at 2:06 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I was able to launch the example experiment and get output
from the Xbaya quickstart:
https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial
I am trying to create and launch my own
16, 2015 at 02:46:20PM -0800, K Yoshimoto wrote:
Is there a difference in the experiments that get created
through xbaya workflow creation and through commandline
createExperiment? I can clone and run the xbaya experiment
through the Python API client, but when I try creating my own
the attributes required by createExperiment for creating a runnable
experiment on localhost?
Kenneth
On Fri, Jan 09, 2015 at 03:26:39PM -0800, K Yoshimoto wrote:
Marlon,
I'm finding all the structures I'm trying to use. Do the other
thrift files get pulled in with the include lines?
I
What team name is it? It's saying I need to ask for an invite
for 'airavata'...
On Wed, Feb 11, 2015 at 11:40:14AM -0500, Marlon Pierce wrote:
Hi devs--
Just a reminder that we are using hipchat for IM:
https://airavata.hipchat.com/chat.
Marlon
Looks like the experiment did run, though. Output was in
the stdout file, rather than in the output dir...
On Fri, Jan 23, 2015 at 04:14:05PM -0800, K Yoshimoto wrote:
I added input and output to my appinterface. Now, I'm seeing something
on server side like this:
[ERROR] could
(MXParser.java:1395)
at org.xmlpull.mxp1.MXParser.next(MXParser.java:1093)
On Fri, Jan 23, 2015 at 11:36:31AM -0800, K Yoshimoto wrote:
Here's the experiment and stack trace from server. It can't figure
out experiment type?
Experiment(userName='kenneth1',
experimentOutputs
On Mon, Jan 26, 2015 at 1:39 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I've been able to create and launch an experiment with the
python API client. The application does not see the argument
I'm trying to pass in. I'm trying to set this with the
registerApplicationInterface function. Maybe
-descriptions mpierce$ find . -type f -exec grep -il
namespace py {} \;
./airavataAPI.thrift
./airavataErrors.thrift
./workflowAPI.thrift
On 1/9/15 4:15 PM, K Yoshimoto wrote:
Okay, looks like the C in Compute needs to be capitalized.
I must have typoed that.
On Fri, Jan 09, 2015 at 11:46:32AM
-0500, Marlon Pierce wrote:
We also run the server components (not XBaya) full time and run daily
tests against it as part of test-drive.airavata.org.
Marlon
On 1/7/15 12:31 PM, K Yoshimoto wrote:
Was it stable enough to use outside the demo? Any problems to note?
On Wed, Jan 07, 2015
script and submit a patch.
Marlon
On 1/8/15 6:28 PM, K Yoshimoto wrote:
I grabbed the source release from
https://dist.apache.org/repos/dist/dev/airavata/0.14/RC2/
and built that. The server startup script is still broken for
Ubuntu when run as the quick start describes (sh airavata
What are multiplex APIs? Does this affect how a client is
written to use a thrift-generated API?
On Wed, Mar 18, 2015 at 02:13:45PM -0400, Suresh Marru wrote:
Hi All,
Airavata API grew larger which causes an issue with handler classes and the
service is also getting unmanageable. Latest
Hi,
Any progress on making test-drive available? I'll cc airavata dev list
also.
Kenneth
On Wed, Feb 25, 2015 at 10:19:37AM -0800, K Yoshimoto wrote:
Just a reminder about opening up access to the test-drive port,
so I can try pointing my client tests at that machine...
Kenneth
for production applications. I can share you those details
on a private email if you want to use dev server.
Thanks
Raminder
On Mar 4, 2015, at 12:10 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Hi,
Any progress on making test-drive available? I'll cc airavata dev list
also.
Kenneth
with a simple /bin/date example so we can get on
same page.
Suresh
On Apr 1, 2015, at 3:23 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Suresh,
I'd just like to know the appropriate way to retrieve experiment
stdout, stderr and return code. If I need to configure
I'm getting failed experiment launches with the echo app on
test-drive:
http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=Cloneofechotest_b853cfea-d809-4f78-b893-14643e5edbc3
Job Status is UNKNOWN, and I don't see a job in the trestles queue.
Outputs
The test-drive sdsc portal is still failing. Now, I can't
even look at old successful expermients. The error is:
Allowed memory size of 134217728 bytes exhausted (tried to allocate 184549633
bytes)
On Wed, Apr 22, 2015 at 10:10:05AM -0700, K Yoshimoto wrote:
Just following up
Thanks,
Eroma
On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Thanks, Eroma.
I see the Experiment Summary for this experiment. There is
no STDOUT field. This is for the echo experiment. There is
an Outputs field:
Outputs Experiment hasn't
On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I am able to run the echo application in an experiment on
the test-drive portal. How do I get the output from the
experiment?
Kenneth
--
Thank You,
Best Regards,
Eroma
:
We checked and this error exists in sdsc portal. We will report as soon as
the bug is fixed.
On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto kenn...@sdsc.edu wrote:
My Experiment Summary does not have STDOUT and STDERR links,
rather it just has this text:
Outputs
I am able to run the echo application in an experiment on
the test-drive portal. How do I get the output from the
experiment?
Kenneth
wrote:
Dev PGA should be working now Kenneth.
On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto kenn...@sdsc.edu wrote:
Nipurn,
Thanks for looking into this. Please send an email update
to the list when it's good to try again.
Kenneth
On Thu, Apr 16, 2015 at 05:42:01PM -0400
script for this scenario and illustrate what is expected.
Currently error codes are very implicit and Airavata is not cataloging them.
Can you please create a JIRA issue, we we will look into it ASAP.
Thanks,
Suresh
On Apr 1, 2015, at 2:58 PM, K Yoshimoto kenn...@sdsc.edu wrote
Hi,
I can create and launch an experiment with the php example gateway
on the test server, using 0.15, but I don't see how to retrieve
the output. Is there a method in the API for doing this? I'd like
to get stdout, stderr and return code from the command run in the experiment.
Thanks,
Okay, just email me whenever you get a chance to try it out.
Kenneth
On Wed, Apr 01, 2015 at 03:54:05PM -0400, Suresh Marru wrote:
Hi Kenneth,
Let me check a python client with a simple /bin/date example so we can get on
same page.
Suresh
On Apr 1, 2015, at 3:23 PM, K Yoshimoto
I think you also want to put in a check for successful submission,
then take appropriate action on failed submission. It can be
difficult to keep the submission limit up-to-date.
On Mon, Aug 03, 2015 at 11:03:46AM -0400, Douglas Chau wrote:
Hey Devs,
Just wanted to get some input on our to
registry afterwards.
@Yoshimito, I didn't think about that - will take it into
consideration.Thanks for the insight!
On Mon, Aug 3, 2015 at 12:11 PM, K Yoshimoto kenn...@sdsc.edu wrote:
I think you also want to put in a check for successful submission,
then take appropriate action
? A regular
ticking event, such as every 5 minutes? Or is there another way?
What types of rejection messages/codes will we receive? For example, what
happens if a job is rejected because it requests too many resources, rather
than exceeding the number of jobs?
On Aug 3, 2015 1:40 PM, K Yoshimoto
should just submit a job and
check if it was accepted or not. If it was rejected, we can add it to a
queue to be resubmitted at a later time or to a different resource. Is this
correct?
On Mon, Aug 3, 2015 at 1:10 PM, K Yoshimoto kenn...@sdsc.edu wrote:
The point is that the policy
I was working with Airavata-remote, and that was working as
a command-line client.
Kenneth
On Tue, Sep 01, 2015 at 04:21:50PM +, Suresh Marru wrote:
> Hi John,
>
> Thank you, this was a fine suggestion. I did not try Click, but looks like
> argparse is good for what I wanted. It being the
For the longer discussion, maybe some type of journaling system to
track, re-do, clean up remote execution might be good...
On Thu, May 12, 2016 at 06:04:57PM +, Pierce, Marlon wrote:
> We have an occasional issue of connection timeouts when performing remote SSH
> operations. This has a
What do you mean by "meta-scheduler" here? Are you trying to
coordinate running of jobs across or amongst a number of different
clusters?
On Fri, Sep 23, 2016 at 08:43:19PM +, Shenoy, Gourav Ganesh wrote:
> Hi Dev,
>
> I am working on this project of building a Mesos based meta-scheduler
ata the capability to run and
> manage jobs across different clusters. Suresh can confirm that.
>
> Thanks and Regards,
> Gourav Shenoy
>
> On 9/23/16, 4:47 PM, "K Yoshimoto" <kenn...@sdsc.edu> wrote:
>
> What do you mean by "meta-scheduler&qu
If you don't have the ability to control policy on remote clusters,
it can be difficult to know for sure which remote cluster will run
the job soonest. This is the case where the remote workload exceeds
existing resources.
For those cases where there is no cost for job submission,
it can work
Requiring case-insensitive usernames might make it a bit
more difficult for existing systems with case-sensitive
usernames. For example, I think jupyterhub servers can be
set up to use unix usernames, which would be case-sensitive.
On Wed, Jun 14, 2017 at 10:18:52AM -0400, Suresh Marru wrote:
>
Hi,
Is this the current API documentation:
http://airavata.readthedocs.io/en/latest/AiravataApi/
http://airavata.apache.org/api-docs/0.16/
Also, I'm wondering if credential score might be
usable to store end user credentials and associated info.
Kenneth
; <https://github.com/apache/airavata/blob/master/thrift-interface-descriptions/data-models/credential-store-models/credential_store_data_models.thrift>
>
> Suresh
>
>
> > On Dec 8, 2017, at 4:51 PM, K Yoshimoto <kenn...@sdsc.edu> wrote:
> >
> > Hi,
&
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