Re: Apache cTAKES - ResourceInitializationException

2015-06-01 Thread HARPREET KHANDUJA (RIT Student)
Pankaj, Caused by: java.lang.NullPointerException* * at java.io.Reader.init(Reader.java:78)* * at java.io.InputStreamReader.init(InputStreamReader.java:72)* My guess is you are trying to read something which is null. Hope it helps. Regards, Harpreet On Wednesday, May 27, 2015, Pankaj Shinde

Re: Getting Started with CTAKES

2015-04-09 Thread HARPREET KHANDUJA (RIT Student)
Hello All, I was just wondering if there would be a gathering of ctakes community at Apache Con next week? Regards, Harpreet On Wed, Apr 8, 2015 at 10:49 AM, Pei Chen chen...@apache.org wrote: Hi Abhishek, Yes, Jay and I will have a session at ApacheCon on Drug Monitoring using

Re: Creating my own dictionaries

2015-03-03 Thread HARPREET KHANDUJA (RIT Student)
I am not sure but not setting the classpath to the project could be the problem. On Tue, Mar 3, 2015 at 5:07 PM, Maite Meseure Hugues meseure.ma...@gmail.com wrote: Hi everyone, I am currently facing a problem to run The CreateLuceneIndexFromDelimitedFile class that allows to get a Lucene

Re: v_snomed_fword_lookup view

2014-08-11 Thread Harpreet Khanduja
Hello Clayton, I do not know about ytex, but I did switch from dictionary-lookup to dictionary-lookup-fast. I update my ctakes-dictionary-lookup-fast project using maven. I think I used Team- Update and switched to the latest revision available and then I downloaded new 3.2 resources from

Re: v_snomed_fword_lookup view

2014-08-11 Thread Harpreet Khanduja
/branching issues may have arisen at some point wrt this module ... If somebody beats me to it then cheers, otherwise I will try to check out tonight and get all the bits in place. Sean -Original Message- From: Harpreet Khanduja [mailto:hsk5...@rit.edu] Sent: Monday, August 11

Re: LabMentions

2014-08-04 Thread Harpreet Khanduja
. - James Masanz -Original Message- From: Harpreet Khanduja [mailto:hsk5...@rit.edu] Sent: Friday, August 01, 2014 11:27 AM To: dev@ctakes.apache.org Subject: LabMentions Hello, Is there a way to include the annotation LabMentions in the pipeline? Thank you for your help

code value for vocabulary in dic-lookup-fast

2014-07-25 Thread Harpreet Khanduja
Hello, I am using ctakes-dictionary-lookup-fast to annotation purposes. But, there is no value for code attribute like it was there when I used ctakes-dictionary-lookup. Is there any way I can find out the code attribute value using ctakes-dictionary-lookup-fast? Thank you so much for the

Re: Lucene for UMLS2014

2014-07-23 Thread Harpreet Khanduja
On Tue, Jul 22, 2014 at 4:19 PM, Harpreet Khanduja hsk5...@g.rit.edu wrote: I will try to do the same. Thank you, Harpreet On Tue, Jul 22, 2014 at 4:11 PM, Masanz, James J. masanz.ja...@mayo.edu wrote: I'm not an svn guru, but you can use Team-Update to get the latest of all the things

Re: Lucene for UMLS2014

2014-07-22 Thread Harpreet Khanduja
in the module's doc/ directory. I will be on vacation for a week, but please don't hesitate to write if you have any questions. Sean From: Harpreet Khanduja [hsk5...@rit.edu] Sent: Thursday, July 17, 2014 5:07 PM To: dev@ctakes.apache.org Subject: Lucene

Re: Lucene for UMLS2014

2014-07-22 Thread Harpreet Khanduja
? It would be a great help. Thank you, Harpreet On Tue, Jul 22, 2014 at 10:53 AM, Harpreet Khanduja hsk5...@g.rit.edu wrote: Thank you so much for your help. Harpreet. On Mon, Jul 21, 2014 at 6:28 PM, Finan, Sean sean.fi...@childrens.harvard.edu wrote: Hi Harpreet, If you are willing

Re: Lucene for UMLS2014

2014-07-22 Thread Harpreet Khanduja
, or from the tag for 3.1.1. -- James -Original Message- From: Harpreet Khanduja [mailto:hsk5...@rit.edu] Sent: Tuesday, July 22, 2014 12:49 PM To: dev@ctakes.apache.org Subject: Re: Lucene for UMLS2014 Hello, I am using ctakes 3.1.1 in eclipse and I have added my customizations

Re: Lucene for UMLS2014

2014-07-22 Thread Harpreet Khanduja
menu option on that (sub)project. -Original Message- From: Harpreet Khanduja [mailto:hsk5...@rit.edu] Sent: Tuesday, July 22, 2014 2:32 PM To: dev@ctakes.apache.org Subject: Re: Lucene for UMLS2014 Hello, I checked out 3.1.1 from trunk SVN. Thank you On Tue, Jul 22, 2014 at 2

Lucene for UMLS2014

2014-07-17 Thread Harpreet Khanduja
Hello, I would be grateful if someone could help. I created a lucene index for umls2014 but only for snomed vocabulary. I did this because I thought this would reduce the dictionary look up time. But it still almost the same. Is there any other way to improve the dictionary look

ctakes_mentionsAnnotations

2014-07-04 Thread Harpreet Khanduja
Hello developers, I am using apache ctakes from eclipse. I ran UIMA_CVD--clinical_documents_pipeline.launch from ctakes-clinical-pipeline project and I loaded AggregatePlainTextUMLSProcessor.xml My question is the values for features like medicationallergy, medicationfrequency,

Re: sectionSegmentAnnotator

2014-07-02 Thread Harpreet Khanduja
the find struct 3rd party lib. Sent from my iPhone On Jul 1, 2014, at 10:19 PM, Harpreet Khanduja hsk5...@rit.edu wrote: Hello,p Thanks for getting back. I tried again and this is the error. Exception in thread main java.lang.NoSuchMethodError: org.jdom.Element.addContent(Lorg/jdom

sectionSegmentAnnotator

2014-07-01 Thread Harpreet Khanduja
Hello, I would really appreciate if anyone could help me on this. I am trying to use SectionSegmentAnnotator in developer version of ctakes inside eclipse. I have included delegateAnalysisEngine key=SectionSegmentAnnotator import location=SectionSegmentAnnotator.xml/

Re: query

2014-06-18 Thread Harpreet Khanduja
hoping to fix that up today. --Pei On Tue, Jun 17, 2014 at 6:22 PM, Harpreet Khanduja hsk5...@rit.edu wrote: Hello Pei, I also ran from cmd line same exception and I checked pom.xml file on this location. https://svn.apache.org/repos/asf/ctakes/trunk The version mentioned

Re: query

2014-06-18 Thread Harpreet Khanduja
Hello Pei, Are you able to use trunk now? Thank you, Harpreet On Wed, Jun 18, 2014 at 12:47 PM, Harpreet Khanduja hsk5...@g.rit.edu wrote: Hello Pei, Thank you so much for helping. Harpreet On Wed, Jun 18, 2014 at 11:08 AM, Pei Chen chen...@apache.org wrote: Harpreet, I just did

Re: query

2014-06-17 Thread Harpreet Khanduja
...@apache.org wrote: Harpreet, Are you using the CVD GUI? or within Eclipse IDE? Also which version cTAKES are you using? trunk? --Pei On Tue, Jun 17, 2014 at 5:13 PM, Harpreet Khanduja hsk5...@rit.edu wrote: Hello Pei, I would really appreciate if you could help me again. After talking

Re: query

2014-06-17 Thread Harpreet Khanduja
it automatically for you. Also try the command line alternative: 'mvn -PrunCVD compile' from the root dir. Let me know. Sent from my iPhone On Jun 17, 2014, at 5:37 PM, Harpreet Khanduja hsk5...@rit.edu wrote: Pei, Thank you for the quick reply. I am using CVD GUI within eclipse which

query

2014-06-11 Thread Harpreet Khanduja
Hello, I am trying to use ctakes as a developer. I am not able to use UMLS resources when I run the AEs which use UMLS Dictionary. I have signed up on the UMLS website and I am using the correct email and password. I have specified username and password in Dictionary Lookup:

Re: query

2014-06-11 Thread Harpreet Khanduja
to ensure it exists target/classes/org/apache/ctakes/dictionary/lookup/umls2011ab/) You can also try running 'mvn clean compile' from the command line as well. -Original Message- From: Harpreet Khanduja [mailto:hsk5...@rit.edu] Sent: Wednesday, June 11, 2014 2:09 PM To: dev