Re: [OMPI devel] [EXTERNAL] Open MPI v4.0.1: Process is hanging inside MPI_Init() when debugged with TotalView

2019-11-12 Thread Larry Baker via devel
the code without interruption. I doubt anyone had ever run the code for such a long sample interval. We found out because we missed recording an important earthquake a week after the race condition was tripped. Murphy's law triumphs again. :) Larry Baker US Geological Survey 650-329-5608 ba...@

Re: [OMPI devel] 3.1.2: Datatype errors and segfault in MPI_Allgatherv

2018-11-01 Thread Larry Baker via devel
Things that read like they should be unsigned look suspicious to me: nbElems -909934592 count -1819869184 Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov > On Nov 1, 2018, at 10:34 PM, Ben Menadue wrote: > > Hi, > > I haven’t heard back from the user yet,

Re: [OMPI devel] [2.1.2rc3] libevent SEGV on FreeBSD/amd64

2017-08-30 Thread Larry Baker
entify whether it is an instruction fetch (VERY unlikely), an operand fetch, or a store that caused the trap? Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov > On 30 Aug 2017, at 3:17:05 PM, Paul Hargrove <phhargr...@lbl.gov> wrote: > > I am testing the 2.1.2rc3 ta

Re: [OMPI devel] Missing support for 2 types in MPI_Sizeof()

2016-04-15 Thread Larry Baker
different compilers (part of what Fortran calls a processor) are used. Better to find out what discussions took place in the MPI standards committee before adding extensions to SIZEOF. They may very well have good reasons to avoid character and logical data, as I concluded. Larry Baker US Geological

Re: [OMPI devel] mpif.h on Intel build when run with OMPI_FC=gfortran

2016-03-03 Thread Larry Baker
be able to get past the incompatibility between the internal formats used by each compiler to store module definitions and declarations for later USE by another compilation unit. I think your expectations cannot be fulfilled because of the compilers, not because of OpenMPI. Larry Baker US

Re: [OMPI devel] mpif.h on Intel build when run with OMPI_FC=gfortran

2016-03-03 Thread Larry Baker
Gilles, Before anyone takes my opinion as gospel, I should note that I only checked my copies of the Fortran 90 Handbook (Adams et al.) and the Fortran 2003 Handbook (Adams et al.). If more than seven dimensions is permitted by Fortran 2008 or Fortran 15, I stand corrected. Larry Baker US

Re: [OMPI devel] mpif.h on Intel build when run with OMPI_FC=gfortran

2016-03-03 Thread Larry Baker
I have never tried to mix compilers like Dave mentions. In any event, the Fortran standard specifies no more than seven dimensions are allowed in an array declaration. I'm puzzled why OpenMPI would generate code that violates the Fortran standard? Larry Baker US Geological Survey 650-329

Re: [OMPI devel] 16 byte real in Fortran

2015-10-14 Thread Larry Baker
). Nothing is said at all about floating-point data types and the correspondence with the integer types. This is what APIs like OpenMPI have to struggle with in the real world. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 14 Oct 2015, at 3:38 PM, Jeff Squyres (jsquyres) wrote

Re: [OMPI devel] Odd master build failure with Studio 12.4 on Linux w/ -m32

2015-02-27 Thread Larry Baker
Gack! Can't type. compiler definition (FF, FC, LD) should have been compiler definition (CC, FC, LD). Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 27 Feb 2015, at 10:39 AM, Larry Baker wrote: > On 27 Feb 2015, at 10:14 AM, Jeff Squyres (jsquyres) wrote: > >>

Re: [OMPI devel] Odd master build failure with Studio 12.4 on Linux w/ -m32

2015-02-27 Thread Larry Baker
convention, will OpenMPI always pass the -m flag on to the wrapper scripts so the addition of --with-wrapper* is not necessary? It would have to handle the embedded blank properly, which may be tricky. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] Fortran issue

2015-02-20 Thread Larry Baker
Good grins. Thanks Paul. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 20 Feb 2015, at 11:49 AM, Paul Hargrove wrote: > >INTEGER JEFF(3) >DATA JEFF/4HMR. ,4HFORT,3HRAN/ > > If you can understand that, you should probably pretend you can't

Re: [OMPI devel] Fortran issue

2015-02-20 Thread Larry Baker
ermines whether the logical value is true or false. > Logical variables can also be interpreted as integer data (an extension to > the Fortran 90 standard). For example, in addition to having logical values > .TRUE. and .FALSE., LOGICAL*1 data can also have values in the range --128 to > 127. &

Re: [OMPI devel] OMPI devel] [1.8.4rc2] orterun SEGVs on Solaris-10/SPARC

2014-12-12 Thread Larry Baker
for "%ld", "%lx", "%lX", "%lf" > are all currently incorrect. Not sure if it is applicable, but C99 has an header which #include's and provides additional capabilities, such as printf()/scanf() format macros for the types defined in . Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] OMPI devel] [1.8.4rc2] orterun SEGVs on Solaris-10/SPARC

2014-12-12 Thread Larry Baker
Or, slightly modified using a defensive coding style: > return 1 + vsnprintf(dummy, sizeof( dummy ), fmt, ap); if you like sizeof() [which I prefer]. if you like sizeof: > return 1 + vsnprintf(dummy, sizeof dummy, fmt, ap); > Larry Baker US Geological Survey 650-329-5608 ba...

Re: [OMPI devel] still supporting pgi?

2014-12-11 Thread Larry Baker
On 11 Dec 2014, at 2:12 PM, Paul Hargrove wrote: > I believe Larry Baker of USGS is also a PGI user (in production, rather than > just testing as I do). That is correct. Although we are running a rather old Rocks cluster kit (CentOS based) which is so old that we cannot run the late

Re: [OMPI devel] OpenMPI v1.8 and v1.8.3 mpirun hangs at execution on an embedded ARM Linux kernel version 3.15.0

2014-11-25 Thread Larry Baker
Allan, If you can still boot the old embedded system, a lot of times the config parameters are saved as /proc/config.gz. You can at least them compare the two configs. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 25 Nov 2014, at 11:11 AM, Allan Wu wrote: > Thanks P

Re: [OMPI devel] openmpi-1.8.2rc2 and f08 interface built with PGI-14.7 causes link error

2014-07-29 Thread Larry Baker
PGI 14.7 is VERY new -- I just received the announcement on Sunday. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 29 Jul 2014, at 4:25 PM, Paul Hargrove wrote: > I have license for PGI and installations of 14.1 and 14.4 > I will see what I can do today in terms of t

Re: [OMPI devel] oshmem fixed sized type support

2014-05-05 Thread Larry Baker
OpenMPI requires C99 conformance, stdint.h will be there, but you will have to check for any width (u)int_t's you care about by name. Since these are typedefs, I am not sure how that might be done in CPP; a configure step might be required. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] 1.7.4rc: MPI_F08_INTERFACES_CALLBACKS build failure with PathScale 4.0.12.1

2014-01-22 Thread Larry Baker
characters i.e., if the linker/loader does not support that many characters in an external symbol. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 22 Jan 2014, at 8:50 AM, Jeff Squyres (jsquyres) wrote: > On Jan 21, 2014, at 11:49 PM, Paul Hargrove <phhargr...@lbl.gov&

Re: [OMPI devel] Warnings from pgcc-13.10

2014-01-17 Thread Larry Baker
mer information: > > Larry Baker > US Geological Survey > 650-329-5608 > ba...@usgs.gov > > Product: 2183-WS > PIN: 507549 > > Problem description: > > I am trying to track down the warnings that occur when compiling the UCAR > NetCDF package with PGI com

Re: [OMPI devel] Warnings from pgcc-13.10

2014-01-17 Thread Larry Baker
-329-5608ba...@usgs.gov On 17 Jan 2014, at 8:56 AM, Ralph Castain wrote:--- Begin Message --- Customer information: Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov Product: 2183-WS PIN: 507549 Problem description: I am trying to track down the warnings that occur when compiling

Re: [OMPI devel] 1.7.4rc2r30168 - PGI F08 failure

2014-01-09 Thread Larry Baker
the version number of the compiler. Trouble was, only the first digit was examined, leading to PGI V10.x, V11.x, V12.x, ..., all being parsed as V1. My recollection is that some C++ code was affected. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 9 Jan 2014, at 4:35 PM, Paul

Re: [OMPI devel] http://newscenter.lbl.gov/wp-content/uploads/2008/07/yelick-berkeleyview-july081.pdf

2013-10-23 Thread Larry Baker
Ralph, et al., Kathy Yelick is featured in this month's ACM Member News sidebar (p. 17). It also turns out she will be giving a lecture at SC13. http://sc13.supercomputing.org/content/sc13-feature-acm-athena-lecturer-katherine-yelick Check it out. Larry Baker US Geological Survey 650-329

Re: [OMPI devel] How to deal with F90 mpi.mod with single stack and multiple compiler suites?

2013-08-22 Thread Larry Baker
separate development trees for each OpenMPI version/compiler product/compiler version. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 22 Aug 2013, at 6:50 AM, Jeff Squyres (jsquyres) wrote: > Sadly, probably not. :(. You'll prbably have the same problem with c++,

Re: [OMPI devel] June OMPI developer's meeting

2013-05-10 Thread Larry Baker
at least part of the way. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 10 May 2013, at 8:07 AM, Ralph Castain wrote: > It's doable, if you have patience. You have to take CalTrain from the airport > to San Jose - see: > > http://www.bart.gov/docs/visitorg

Re: [OMPI devel] June OMPI developer's meeting

2013-05-07 Thread Larry Baker
ly set up > something ahead of time. This option will work best for me. All I need is an e-mail notice of where and when within 30 minutes or so of the reservation time (depending on the traffic on 101 :) ). Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] June OMPI developer's meeting

2013-04-30 Thread Larry Baker
spend any money, unless I do it on my own (in which case I have to bend over backwards to obscure my government affiliation -- like no mention of USGS on my registration or name badge). Thanks, Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 30 Apr 2013, at 2:58 PM, Jeff

Re: [OMPI devel] [OMPI svn] svn:open-mpi r27601 - trunk

2012-11-15 Thread Larry Baker
;10.4.2A" | perl -E 'while () { if ( > m/(^|\s)((\d+\.)+\d+([a-zA-Z]\b)?)/ ) { $version = $2 ; print $version, "\n" > ; last } }' > 10.4.2A Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 15 Nov 2012, at 8:42 AM, Hjelm, Nathan T wrote: > C

Re: [OMPI devel] [OMPI svn] svn:open-mpi r27601 - trunk

2012-11-14 Thread Larry Baker
with-gxx-include-dir=/include/c++/4.2.1 > Thread model: posix > gcc version 4.2.1 (Apple Inc. build 5666) (dot 3) Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] [OMPI svn] svn:open-mpi r27601 - trunk

2012-11-14 Thread Larry Baker
--version". Assuming the RE parser I wrote is satisfactory, it would have to be adapted to fit in the framework, i.e., it has to be portable. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 14 Nov 2012, at 5:41 PM, Paul Hargrove wrote: > On Wed, Nov 14, 2012 at 6:26

Re: [OMPI devel] [OMPI svn] svn:open-mpi r27601 - trunk

2012-11-14 Thread Larry Baker
ex-31)" | sed -n -E -e > '1s/^.*[^A-Za-z0-9_-]?([0-9]+[.][0-9]+[.][0-9]+)[^A-Za-z0-9_-]?.*$/\1/p' > 2.5.35 Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 14 Nov 2012, at 3:26 PM, Ralph Castain wrote: > Sorry Nathan - I had to revert this out as it broke builds on Mac

Re: [OMPI devel] r27078 and OMPI build

2012-08-24 Thread Larry Baker
Nice catch! Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 24 Aug 2012, at 4:55 PM, Paul Hargrove wrote: > OK, I have a vanilla configure+make running on both SPARC/Solaris-10 and > AMD64/Solaris-11. > I am using the 12.3 Oracle compilers in both cases to match the

Re: [OMPI devel] [OMPI svn-docs] svn:open-mpi-tests r2002 - trunk/ibm/collective

2012-07-11 Thread Larry Baker
The value of i is exactly as it would be in C for the value of a loop control variable at loop exit. (As opposed to being undefined, which is what is used to be.) This dates from Fortran-77. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 11 Jul 2012, at 10:44 AM, Jeff

Re: [OMPI devel] MPI_Cart_coords_f segv with Intel compiler

2012-05-24 Thread Larry Baker
a patch for ptmalloc2/malloc.c for OpenMPI 1.4.3 which automatically adjusts the optimization level for _int_malloc(), which is where the bug occurs. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov -- Start of Patch -- --- opal/mca/memory/ptmalloc2/malloc.c.original 2010

[OMPI devel] Clam AntiVirus

2012-03-22 Thread Larry Baker
Intel V12.x compiler) and balk. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] Collective communications may be abend when it use over 2GiB buffer

2012-03-05 Thread Larry Baker
t". But, the main text states that there is no ordering of the subexpression "rank * rcount * rext". When the compiler chooses to evaluate "rank * rcount" first, the overflow described by Yuki can result. I think you are correct that the subexpression will get promoted to (ptrd

Re: [OMPI devel] 1.5 supported systems

2012-02-29 Thread Larry Baker
e_type && OMPI_REAL16_MATCHES_C ) _ACEOF @@ -60152,7 +60160,7 @@ cat >>confdefs.h <<_ACEOF -#define OMPI_HAVE_F90_COMPLEX32 $ofc_have_type +#define OMPI_HAVE_F90_COMPLEX32 ( $ofc_have_type && OMPI_REAL16_MATCHES_C ) _ACEOF Larry Baker US Geological Survey 6

Re: [OMPI devel] 1.5 supported systems

2012-02-23 Thread Larry Baker
. When we say that "gcc" is supported, is that intended to mean the command or the compiler? I would assume it meant the latter. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 23 Feb 2012, at 4:44 AM, Jeffrey Squyres wrote: I don't think I want to get specific ab

Re: [OMPI devel] 1.5 supported systems

2012-02-22 Thread Larry Baker
cc-4.2/bin/*cc* /Developer/usr/llvm-gcc-4.2/bin/i686-apple-darwin9-llvm-gcc-4.2 /Developer/usr/llvm-gcc-4.2/bin/llvm-gcc-4.2 /Developer/usr/llvm-gcc-4.2/bin/powerpc-apple-darwin9-llvm-gcc-4.2 Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 22 Feb 2012, at 5:55 PM, Paul H. Hargrove

Re: [OMPI devel] openmpi-1.5.5rc1: 2nd gmake dependence (mostly VT)

2011-12-20 Thread Larry Baker
> I am pretty sure a literal "rm -rf" should be fine. Not necessarily. I'm not at work. But I think either -f or -r might not be legal on all Unix's (Tru64 Unix? AIX?). Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On Dec 20, 2011, at 5:19 PM, Paul H. H

Re: [OMPI devel] [BUG?] OpenMPI with openib on SPARC64: Signal: Bus error (10)

2011-11-23 Thread Larry Baker
GS="-g -O3" \ CXX="g++ -m32" \ CXXFLAGS="-g -O3" \ FC="gfortran -m32" \ FCFLAGS="-g -O3" \ F77="gfortran -m32" \ FFLAGS="-g -O3" Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 23 Nov 2011, a

Re: [OMPI devel] PGI error invoked when svnversion is unavailable

2011-11-15 Thread Larry Baker
Tom,This is because the code in OpenMPI presumes macros will be expanded in pragmas, but that is not required by the C standard.  (See my e-mails below from last year with PGI, TPR 17186.)  I fixed OpenMPI 1.4.3 configure in the attached patch.  My patch also disables inline assembly for PGI C++,

Re: [OMPI devel] make check fails for Intel 2011.6.233 (OpenMPI 1.4.3)

2011-11-08 Thread Larry Baker
and the linked thread on the Intel forum for more info about.I couldn't find a trace of this being fixed in the 1.4 series, so I would wait upgrading until this issue gets resolved.  Thanks,    george.On Oct 17, 2011, at 23:00 , Larry Baker wrote:George,I have not had time to look over the 1.4.3 make

Re: [OMPI devel] make check fails for Intel 2011.6.233 (OpenMPI 1.4.3)

2011-10-19 Thread Larry Baker
that matches the version of the product (as opposed to #define __INTEL_COMPILER and #define __ICC from within the V12.1.0 compiler). Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 19 Oct 2011, at 10:47 AM, Jeff Squyres wrote: Did this get reported to the Intel compiler

Re: [OMPI devel] make check fails for Intel 2011.6.233 (OpenMPI 1.4.3)

2011-10-18 Thread Larry Baker
if there is code in OpenMPI that looks at __ICC and __INTEL_COMPILER, but that could cause problems. (Pass this on upstream to the libtool people?) Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 17 Oct 2011, at 8:18 PM, George Bosilca wrote: Larry, Sorry for not updating

Re: [OMPI devel] make check fails for Intel 2011.6.233 (OpenMPI 1.4.3)

2011-10-07 Thread Larry Baker
just cruft that can be removed? Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 7 Oct 2011, at 11:08 AM, Larry Baker wrote: I ran into a problem this past week trying to upgrade our OpenMPI 1.4.3 for the latest Intel 2011 compiler, 2011.6.233. make check fails with Segmenta

[OMPI devel] make check fails for Intel 2011.6.233 (OpenMPI 1.4.3)

2011-10-07 Thread Larry Baker
list knows what the purpose of that test is, whether the Intel 2011 compilers are expected to have this feature enabled, and whether the code this enables can cause this problem if the Intel 2011.6.233 compilers do not fully support whatever this test is intended to discern. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] Building Error

2011-08-16 Thread Larry Baker
fixed problem like --without-rte-support failing. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 16 Aug 2011, at 11:53 AM, Matthew Russell wrote: Hi Larry, Thank you for your interest. I believe your solution is the right one, however I think there's some other issues

Re: [OMPI devel] Building Error

2011-08-16 Thread Larry Baker
ase_open.o is not in libopen-rte.a for some reason. Or, the external name that gets defined in odls_base_open.c is not the same as the external name being referenced in errmgr_base_fns.c. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 16 Aug 2011, at 11:53 AM, Matthew Russell w

Re: [OMPI devel] Building Error

2011-08-16 Thread Larry Baker
the error? I have PGI and about five other compilers on our cluster. I'll get to OpenMPI 1.4.3 with all those as soon as I fetch the latest versions and reinstall my cluster software (Rocks just came out with 5.4.3). Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 16 Aug

Re: [OMPI devel] Building Error

2011-08-16 Thread Larry Baker
-lutil -lm -lpthread While this may not be what Matthew is encountering, it is definitely something to keep in your bag or tricks. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 15 Aug 2011, at 5:43 PM, Ralph Castain wrote: FWIW: I build OMPI on Mac OS-X (Snow Leopard) every da

Re: [OMPI devel] Building Error

2011-08-15 Thread Larry Baker
-search_paths_first to ld when $ (CC) is the linker command in makefile.ux export LDFLAGS=-Wl,-search_paths_first Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 15 Aug 2011, at 1:01 PM, Matthew Russell wrote: I hope this problem merits being posted here. On OS X (Snow Leopard, and Lion

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-24 Thread Larry Baker
ferent remote_mtu's): attr.path_mtu = (openib_btl->device->mtu < endpoint- >rem_info.rem_mtu) ? openib_btl->device->mtu : rem_info->rem_mtu; Can someone verify that the code in ompi/mca/btl/openib/btl_openib/ connect/btl_openib_connect_xoob.c is correct? Larry

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-23 Thread Larry Baker
>mtu < endpoint- >rem_info.rem_mtu) ? openib_btl->device->mtu : rem_info->rem_mtu; The test on the right hand side of the conditional is endpoint- >rem_info.rem_mtu, while the "false" expression is rem_info- >rem_mtu. I suspect one of them is no

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-23 Thread Larry Baker
actually disable them, despite saying it did. I like defensive code. The COMPLEX*32 datatype protection needs to be applied to the REAL*16 datatype as well in ompi/datatype/dt_module.c. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 5 May 2011, at 7:15 AM, Jeff Squyres wr

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-20 Thread Larry Baker
ings go away? Maybe a macro you use in the library? While looking at the source of the warnings, I saw that the code in test/class/ompi_rb_tree.c, lines 361-368 are duplicated in lines 369-376 (quoted, below). Is this intentional? Larry Baker US Geological Survey 650-329-5608 ba...@usgs

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-19 Thread Larry Baker
1.4.3, I should have time to test 1.4.4. Will there be another 1.4.4 release candidate? Do I have to hurry to give you my feedback? Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 19 May 2011, at 6:58 PM, Jeff Squyres wrote: With all the outputs from Paul and Sam, I think

Re: [OMPI devel] SSE instructions?

2011-05-19 Thread Larry Baker
performance from optimizations, unless the processes are all running on the same machine. I will ask engineering how messages are passed when all the processes are running on the same hardware. I am running on a 64-bit machine; I used -fast. Larry Baker US Geological Survey 650-329-5608 ba

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-19 Thread Larry Baker
symbols. Default: "plpa_" --with-valgrind(=DIR) Directory where the valgrind software is installed --with-timer=TYPE Build high resolution timer component TYPE Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 5 May 2011, at 7:1

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-19 Thread Larry Baker
and libraries to replace the text in 1.4.x --with-tm(=DIR) Directory where the tm software is installed Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 5 May 2011, at 7:15 AM, Jeff Squyres wrote: Fixed the ROMIO attribute problem properly this time

[OMPI devel] SSE instructions?

2011-05-18 Thread Larry Baker
The PGI compilers have a -fast and a -fastsse option. Does OpenMPI make effective/safe use of SSE instructions (block moves maybe?)? On their web site, PGI uses -fast in their examples for OpenMPI rather than -fastsse. I don't know why. Larry Baker US Geological Survey 650-329-5608 ba

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-18 Thread Larry Baker
, Jeff Squyres wrote:Hmm.  This sounds right, but I'm a little curious as to why this never came up before.  What was the specific problem that caused you to add this patch?On May 17, 2011, at 9:41 PM, Larry Baker wrote:This bug applies to OpenMPI 1.4.x and 1.5.x.Inline assembly does not work

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-18 Thread Larry Baker
en-mpi.org/community/lists/users/2009/11/11277.php . Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 18 May 2011, at 5:50 AM, Jeff Squyres wrote: (adding libtool-patc...@gnu.org) Is this guaranteed to work for all versions of the PGI compiler? I.e., does "pgCC -V" alw

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-17 Thread Larry Baker
t_ipa8_conftest.oo \ conftest$ac_exeext conftest.$ac_ext fi +fi { $as_echo "$as_me:$LINENO: result: $asm_result" >&5 $as_echo "$asm_result" >&6; } Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 5 May 2011, at 7:15 AM, Jeff

Re: [OMPI devel] 1.4.4rc2 is up

2011-05-17 Thread Larry Baker
(prelink_cmds, $1)='tpldir=Template.dir~ rm -rf $tpldir~ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~ Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On 5 May 2011, at 7:15 AM, Jeff Squyres wrote: Fixed the ROMIO attribute

Re: [OMPI devel] [OMPI svn-full] svn:open-mpi r24665

2011-05-02 Thread Larry Baker
't have to know what parse_dots() returns). I suppose a case could also be made that Tim's code is more maintainable, given the discovery already of a misplaced (though benign) break and the possibility of a typo in all those calls to parse_dots(). Just my $.02 Larry Baker US Geological Su

Re: [OMPI devel] ompi_mpi_init: orte_init failed

2011-01-20 Thread Larry Baker
;-g -fast" # Make the library make >make.log 2>&1 # Validate the library make check >check.log 2>&1 Then, I used the following commands to install it: # Install OpenMPI 1.4.2 cd openmpi-1.4.2 make install >install.log 2>&1 Maybe the first thing you could try is

Re: [OMPI devel] 1.5rc5 has been posted

2010-09-03 Thread Larry Baker
${dim}/' \ openmpi-1.4.2/ompi/mpi/f90/scripts/mpi_sizeof.f90.sh.original \ >openmpi-1.4.2/ompi/mpi/f90/scripts/mpi_sizeof.f90.sh chmod +x openmpi-1.4.2/ompi/mpi/f90/scripts/mpi_sizeof.f90.sh Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On Sep 1, 2010, at 5:09 PM, Larry

Re: [OMPI devel] 1.5rc5 has been posted

2010-09-01 Thread Larry Baker
a fix for this in the next few days, unless the author wants to. Is that okay? Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On Aug 17, 2010, at 2:18 PM, Jeff Squyres wrote: We still have one known possible regression: https://svn.open-mpi.org/trac/ompi/ticket/2530

Re: [OMPI devel] 1.5rc5 has been posted

2010-09-01 Thread Larry Baker
-10.x PGI compilers. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov Development environment: [baker@hydra ~]$ cat /etc/redhat-release CentOS release 4.5 (Final) [baker@hydra ~]$ uname -a Linux hydra.wr.usgs.gov 2.6.9-55.0.2.ELsmp #1 SMP Tue Jun 26 14:14:47 EDT 2007 x86_64

[OMPI devel] Fwd: Fwd: 1.5rc5 has been posted

2010-09-01 Thread Larry Baker
about 10.1-10.6 not working is possibly due to the (previously reported) mistaken identification of the 10.x compilers by configure/libtool, which I fixed. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov Begin forwarded message: From: Larry Baker <ba...@usgs.gov>

[OMPI devel] Fwd: 1.5rc5 has been posted

2010-08-31 Thread Larry Baker
My head hurts from working on this! I just realized is for OpenMP, not OpenMPI. So, of course the PGI is used. I still don't know why otfprofile is failing, but at least that explains why OpenMPI-1.5rc5 has no . Sorry for the noise. Larry Baker US Geological Survey 650-329-5608 ba

Re: [OMPI devel] 1.5rc5 has been posted

2010-08-31 Thread Larry Baker
t;. I don't know how to fix this. Where is otfprofile.cpp expecting to get ? Why isn't it there? I'm beginning to think this contrib/ vt stuff should not be enabled by default. I don't know that it is needed in general. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On A

[OMPI devel] Fwd: 1.5rc5 has been posted

2010-08-30 Thread Larry Baker
The same problem (LIBS = is missing -lpthread) occurs in orte/tools/ {orte-clean,orte-iof,orte-ps,orted,orterun,orte-top}/Makefile. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov Begin forwarded message: From: Larry Baker <ba...@usgs.gov> Date: August 30, 2010 4:48:01

Re: [OMPI devel] 1.5rc5 has been posted

2010-08-30 Thread Larry Baker
OC_DEBUG and NDEBUG. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On Aug 23, 2010, at 5:29 PM, Larry Baker wrote: The PGI C compiler complains (issues a warning) for the redefinition of the assert macro in opal/mca/memory/ptmalloc2/malloc.c: Making all in mca/memory/ptmalloc

Re: [OMPI devel] 1.5rc5 has been posted

2010-08-30 Thread Larry Baker
> $(AM_V_CCLD)$(LINK) $(opal_wrapper_OBJECTS) $(opal_wrapper_LDADD) $(LIBS) I don't know anything about automake, so I don't know what code to look at that changed between 1.4.2 and 1.5rc5 that defines the *LIBS Makefile variables. Larry Baker US Geological Survey 650-329-5608 b

Re: [OMPI devel] 1.5rc5 has been posted

2010-08-30 Thread Larry Baker
rappers/Makefile (configure/automake?) from 1.4.2 to 1.5rc5 are not supplying the pthreads library correctly to the link step. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On Aug 17, 2010, at 2:18 PM, Jeff Squyres wrote: We still have one known possible regression: https://svn.o

[OMPI devel] OpenMPI 1.4.2 and PathScale 3.2 C++

2010-08-27 Thread Larry Baker
possible, attach it to your problem report. make[6]: *** [vtfilter-vt_tracefilter.o] Error 1 Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov

Re: [OMPI devel] 1.5rc5 has been posted

2010-08-19 Thread Larry Baker
form of #pragma ident used by OpenMPI: ompi_ident="string_not_coincidentally_inserted_by_the_compiler" cat > conftest.c <When this code is used instead (twice), the PGI C compiler fails the configure test for #prgma ident support, as it should. Larry Baker US Geological Sur

Re: [OMPI devel] 1.5rc5 has been posted

2010-08-19 Thread Larry Baker
[baker@hydra openmpi-1.5rc5]$ find . -name libtool.m4 -exec grep '1-5' {} ';' -print *pgCC\ [[1-5]]* | *pgcpp\ [[1-5]]*) ./config/libtool.m4 *pgCC\ [[1-5]]* | *pgcpp\ [[1-5]]*) ./opal/libltdl/m4/libtool.m4 Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov On A

[OMPI devel] Fortran mpi module missing MPI_CART_SHIFT

2009-10-15 Thread Larry Baker
Call MPI_CART_SHIFT( mpi_comm_grid, direction, amount, -^ With Fortran 90 "Include 'mpif.h'", no errors. Larry Baker US Geological Survey 650-329-5608 ba...@usgs.gov $ /usr/local/openmpi/bin/ompi_info Package: Open MPI r...@savaii.wr.usgs.gov Distribution