External Email - Use CautionHi there, I tried to analysed "mri_glmfit --glmdir g1v7.wls --y ces.nii.gz --wls cesvar.nii.gz --C Main.mtx --C PDI.mtx --C Sex.mtx --C Age.mtx --C Edu.mtx --C BDI.mtx --C SBQ.mtx --C CD.mtx --fsgd g1v7.fsgd --surface fsaverage lh --cortex --fwhm 5 "
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Hello FreeSurfer Developers,
I have a question about references and descriptions to all the morphological
features available in aparc.stats, extracted from structural MRI. I am using
all the different features (SurfArea, GrayVol, ThickAvg,
Don't know. Looks like it is some kind of internal matlab error. Did you
recently change versions?
btw We are no longer supporting lGI at this time.
On 9/3/2019 12:11 PM, Avi Gharehgazlou wrote:
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Hi,
I have ran the lGI flag many times in the past. However,
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When running mris_decimate on macOS High Sierra, I get this error:
dyld: Library not loaded: /usr/local/lib/libglib-2.0.0.dylib
Referenced from: /Applications/freesurfer/bin/mris_decimate
Reason: image not found
Abort trap: 6
Is this a library
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Hello,
On the Mac, we use homebrew to provide some libraries that freesurfer binaries
need to link against in order to run, seehttps://brew.sh/
Once you install homebrew you should have a “brew” command available in the
terminal window. Then to get
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Hi!
I wanted to ask again whether there is a way to display the color wheel in
rtview and/or freeview. We are debugging our analyses and it would be
immensely helpful to have a legend that specifies the color assignments.
Thank you,
Caspar
On Wed, Sep
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Multiple postdoc positions in cognitive neuroscience and computational
neuroscience are available in the Opitz Lab, University of Minnesota! The
lab works in the field of brain stimulation (with the focus on the
transcranial methods – TMS, tACS/tDCS)
Hi Philipp
I'll leave the volume question to Doug. The curvatures are estimated by
fitting a second order polynomial to the local height function in the
tangent bundle then computing the Hessian using the white (gray/white
boundary) surface. We also have some discrete measures of curvature
That is the recon-all.log file. What I want is the terminal output from
make_average_subject
You can capture it with
make_average_subject [your arguments] |& tee mas.log
On 9/4/2019 9:16 PM, Maxime Perron wrote:
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Good evening Greve,
Thanks for your quick
Does this file exist
/media/dell/AA32E66632E6374B/Data_prac/220liujiayue/20181217/fsaverage/label/lh.BA1_exvivo.label
and do you have read permissions to it?
On 9/5/2019 5:39 AM, liuxingze1993 wrote:
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Hello， Dear FreeSurfer Developers,
Hi, I'm attempting to
For cortical volume we compute vertex-wise volume based on dividing each
obliquely truncated trilateral pyramid into three tetrahedra. Based on
Anderson M. Winkler's srf2vol matlab script.
On 9/6/2019 10:22 AM, Bruce Fischl wrote:
Hi Philipp
I'll leave the volume question to Doug. The
Hi Caspar, sorry for the delay. I have not used the retinotoy stream in a long,
long time so I don't know off the top of my head. I'll have to look into it.
tksurfer (from rtview) does have a way to display using the color wheel, but I
don't remember how to do it.
Ruopeng, can freeview display
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Bruce, could you explain how can I do that? I mean what command should I use
and parameters?
Best regards,
Anton Troitskii
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Hi Anton
recon-all -sd -s -make all
should do the trick
cheers
Bruce
On Fri, 6 Sep 2019,
Троицкий Антон Александрович wrote:
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Bruce, could you explain how can I do that? I mean what command should I use
and parameters?
Best regards,
Anton Troitskii
Look in the *.y.ocn.dat file.
From mri_glmfit-sim --help
csdbase.y.ocn.dat - this is a summary of the input (y) over each
cluster. It has a column for each cluster. Each row is a subject. The
value is the average of the input (y) in each cluster. This is a
simple text file.
On 9/3/2019 5:16
You can just run recon-all again with only the -qcache flag (this is actually
how it is intended to be run)
On 9/5/2019 2:52 PM, Swanson,Clayton wrote:
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Hi FreeSurfer folks,
I searched through the archives and was unable to find the answer I was looking
Hi Arsene, you did not say anything wrong. What you are trying to do is a
research project in and of itself. To support you, we would have to put huge
amounts of time into it, which we are not willing to do.
doug
On 9/5/2019 7:56 AM, arsene ella wrote:
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You can get the volume from the aseg.stats file. Unfortunately, we do not
separate the lesions into left and right. You could do something like
mri_binarize --i aseg.mgz --match 77 --o wmlesions.mgz
mri_volcluster --i wmlesions.mgz --sum lesions.sum.dat --thmin 0.5 --regheader
subject
This will
Did you see the part where it says "If you seek help with this problem, make
sure to send:"?
On 9/5/2019 11:00 PM, Gwang-Won Kim wrote:
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Hi there,
I tried to analysed "mri_glmfit --glmdir g1v7.wls --y ces.nii.gz --wls
cesvar.nii.gz --C Main.mtx --C PDI.mtx
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