Hi Leandro,
I apologize for the delay in answering this.
The highest resolution logo I have is at
http://gmod.org/wiki/File:GalaxyLogoBigger.png, which may not be big enough
for some purposes, but will look much better than what you have been using.
Sometime in the near future I hope to get a
Hi,
Have you tried grep'ing the error message in the lib files to see where
Galaxy goes to during the upload of these files?
like: grep /The uploaded binary file contains inappropriate content/
`find *`
I had a similar problem when I modified Galaxy to manage .gz files
without uncompressing
Hello all,
The 2011 Galaxy Community Conference starts in about 10 hours with the sold
out Introduction to Galaxy session, and then gets fully rolling Wednesday
morning with the main meeting. See the schedule (
http://galaxy.psu.edu/gcc2011/Programme.html) for full details.
If you want to
darren.culle...@csiro.au wrote:
Hi All,
Sorry for the delay, I have had a couple of other projects on the go.
Still no good. I have made the data type unsniffable and added what I thought
was the correct information. I have also added the extension (sfx) to the
list of unsniffable
Hi Leandro,
The Galaxy Team has recently been preparing for and traveling in advance
of the Galaxy Community Conference, which begins today. Unfortunately I
don't have an answer for you, but when we're all back at work next week,
someone should be able to respond.
Thanks,
--nate
Leandro
Thanks! This has been fixed in changeset 5594:2f84c42a548a.
Also, if I could ask for a minor thing to assist us with list
maintenance: when starting a new thread on the list, please create a
brand new email to galaxy-dev rather than replying to an existing
message. Replying includes headers
Olen Vance Sluder Jr wrote:
Problem solved: I found this stack trace in the job runner's log:
Traceback (most recent call last):
File ./scripts/paster.py, line 34, in module
command.run()
File
/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py,
line
Shantanu Pavgi wrote:
I am looking at options to configure settings such as wall-time, memory, and
number of cores etc. for each tool and wondering if this can be done using
multiple cluster job runner configurations. Is it possible to define
multiple cluster job runner configurations
Hi Dave, thank you much appreciated!
On Tue, May 24, 2011 at 9:43 AM, Dave Clements
cleme...@galaxyproject.orgwrote:
Hi Leandro,
I apologize for the delay in answering this.
The highest resolution logo I have is at
http://gmod.org/wiki/File:GalaxyLogoBigger.png, which may not be big
Hi Nate,
Thanks for the ping, have fun at the conference!
On Tue, May 24, 2011 at 11:22 AM, Nate Coraor n...@bx.psu.edu wrote:
Hi Leandro,
The Galaxy Team has recently been preparing for and traveling in advance
of the Galaxy Community Conference, which begins today. Unfortunately I
don't
Hi, I am a new linux user, would like to use galaxy directly on my computer
could you instruct me how to download galaxy?
thanks
Jasmine Jacob-Hirsch
Functional Genomics
Cancer Research Center
Sheba Medical Center
972-3-5302147
972-523790500
Hi All,
Sorry for the delay, I have had a couple of other projects on the go.
Still no good. I have made the data type unsniffable and added what I thought
was the correct information. I have also added the extension (sfx) to the list
of unsniffable binary formats in binary.py but it does not
Hello Jasmine,
Please see http://getgalaxy.org
On May 24, 2011, at 1:21 AM, jasmine jacob wrote:
Hi, I am a new linux user, would like to use galaxy directly on my computer
could you instruct me how to download galaxy?
thanks
Jasmine Jacob-Hirsch
Functional Genomics
Cancer Research
Hi Jasmin,
at first you need to install mercurial. Under debian/ubuntu install it
with:
sudo apt-get mercurial
Then you can check out all the necessary stuff with:
hg clone https://bitbucket.org/galaxy/galaxy-dist
You can start galaxy with:
./run.sh
For more information, please see the
On Tue, May 24, 2011 at 3:12 PM, Johannes Eichner
johannes.eich...@uni-tuebingen.de wrote:
Dear Galaxy-Dev Team,
is it possible to display the headers of the columns which can be
selected in a data_column parameter? Currently, only the column index
(e.g., c1, c2, etc.) is displayed in Galaxy.
On May 24, 2011, at 4:49 AM, Nate Coraor wrote:
Shantanu Pavgi wrote:
I am looking at options to configure settings such as wall-time, memory, and
number of cores etc. for each tool and wondering if this can be done using
multiple cluster job runner configurations. Is it possible to
See this page for the official installation instructions
https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy
2011/5/24 Björn Grüning bjoern.gruen...@pharmazie.uni-freiburg.de
Hi Jasmin,
at first you need to install mercurial. Under debian/ubuntu install it
with:
sudo apt-get
On May 19, 2011, at 4:05 PM, Shantanu Pavgi wrote:
I have configured custom cluster_files_directory in universe_wsgi.ini file.
The cluster jobs are running fine, however job scripts, stdout and stderr are
being written in default database/pbs location. Am I missing something in the
We upgraded our Galaxy instance to the current Dist build at the end of last
week. Since then we've had a couple new users attempt to create accounts.
When they go to the create user page (http://galaxy.jax.org/user/create)
they get a 500 Server Error.
The message in the error log is:
There is a C program for merging Gzip files (gzjoin) that I'd love to rely on
for a core Galaxy capability. Is there a standard way to get things like this
included in Galaxy? Recoding it in Python would be a bit of a pain, and might
be a lot slower due to the IO layer not allowing the reuse of
Greg,
We've tried just reloading the browser and that didn't do anything.
As for deleting the cached templates, on our development server I tried
deleting everything under the database/compiled_templates directory (I even
restarted my server) and it appeared to have no affect. We still get the
Hi Dave,
If you do not have a template_cache_path config setting in universe_wsgi.ini,
then your cached templates are stored in the default directory of
~/database/compiled_templates.
Deleting your cached templates in ~/database/compiled_templates should have
corrected the problem, assuming
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