Hello Shashi,
Using Galaxy on the cloud may be a solution for you.
Please see:
http://wiki.g2.bx.psu.edu/Admin/Cloud
Hopefully this helps,
Best,
Jen
Galaxy team
On 7/7/11 6:35 AM, shashi shekhar wrote:
Hi All,
i have system with single cpu . and have installed galaxy .while
running galaxy
Hello,
To confirm: the correct source would be this project, only has
chromosomes 1-5, at NCBI? Or is there a preferred (more complete/recent)
source?
http://www.ncbi.nlm.nih.gov/bioproject/32607
Once we have the source confirmed, we can add this genome to our to-add
list,
Best,
Jen
Gala
Hello Vipin,
I opened a ticket at bitbucket for this type of search in Trackster.
Please feel free to add detail to the enhancement request.
http://bitbucket.org/galaxy/galaxy-central/issue/611/search-in-trackster-by-feature-id-or-name
Thanks!
Jen
Galaxy team
On 7/11/11 9:11 AM, Vipin TS wr
Hi,
In our local galaxy install (currently revision 50e249442c5a) we are seeing few
output datasets as 'empty' in the galaxy web interface. The actual file size on
the filesystem is ~ 4GB. These 'empty' files can be downloaded by clicking on
download/view icons, however they can't be imported
I figured it out. Please disregard my last email.
Thanks,
Ilya
From: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Monday, July 11, 2011 10:00 AM
To: galaxy-dev@lists.bx.psu.edu; galaxy-user-boun...@lists.bx.psu.edu
Subject: [g
I was wondering how to pass a GTF file to the current Tophat implementation in
Galaxy. It says that -G/--GTF is an implemented parameter but that option does
not show up. BTW, what version of tophat is supplied with the most recent
stable release.
Thanks,
Ilya
Ilya Chorny Ph.D.
Bioinformatic
Hi Jeremy,
Sorry for the delayed response from my side.
(1) click the pencil on a BAM dataset;
> (2) try converting from BAM to BAI;
>
> If the conversion failed, you should receive an informative error message
> about why it's failing. Once you get this conversion to pass, you should be
> able
> I recommend to use the repeat tag (see
> http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax) around the
> existing parameter to make it possible to select multiple files.
Sarah's suggestion is spot on. See the Cuffcompare wrapper for an example of
how to use this tag.
Gus, if you e
Hi Gus,
for parameters of the type "select" you can enable the option to select
multiple options. However, this isn't really suitable for files, I think.
I recommend to use the repeat tag (see
http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax) around the
existing parameter to make
