I think the relevant piece of code is in
templates/webapps/galaxy/ibrary/common/common.mako.
The lines
%if not link_data_only or
link_data_only == 'copy_files':
Copy files into Galaxy
Excellent talk! I watched it earlier in the week - I feel like it has
already made me a better programmer.
That said, I am not sure I have any real great answers for you. The
least disruptive thing you could do is add a new metadata element to
the Text datatype (hopefully most text based datatypes
Hi Peter,
On Nov 28, 2013, at 12:56 PM, Peter Cock wrote:
> On Thu, Nov 28, 2013 at 5:30 PM, Peter Cock wrote:
>>
>> Thank you - that alerted me to a missing set of out output files for a
>> recently added test, hopefully addressed in this revision:
>> http://testtoolshed.g2.bx.psu.edu/view/p
Hi folks,
Has someone seen this behaviour? I'm trying to do a once-over maintenance
cleanup of our galaxy installs. The galaxy account is getting emailed nightly
with an error which is happening when it gets to delete_datasets.sh cron task,
basically:
AttributeError: 'NoneType' object ha
On Thu, Nov 28, 2013 at 5:30 PM, Peter Cock wrote:
>
> Thank you - that alerted me to a missing set of out output files for a
> recently added test, hopefully addressed in this revision:
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/1b8a92016045
>
> But its not all good news - a
On Thu, Nov 28, 2013 at 5:16 PM, Greg Von Kuster wrote:
> Hello Peter,
>
> On Nov 28, 2013, at 4:56 AM, Peter Cock wrote:
>
> Hi Greg,
>
> Things look much better today on the Test Tool Shed, with
> most of my tools under "Latest revision: all tool tests pass"
> again - or as expected a few unde
Hello Peter,
On Nov 28, 2013, at 4:56 AM, Peter Cock wrote:
> On Wed, Nov 27, 2013 at 9:02 PM, Greg Von Kuster wrote:
>>
>> Hello Peter,
>>
>> I've done a significant amount of re-engineering of the
>> Tool Shed's install and test framework over the past 2
>> weeks, so the results you are see
Hello all,
FAO: Administrators of local Galaxy instances using the NCBI BLAST+ wrappers.
Over on the galaxy_blast repository I have been updating the
NCBI BLAST+ wrappers (including unit tests) to work with the
current release, NCBI BLAST+ 2.2.28 (aka BLAST 2.2.28+):
https://github.com/peterjc/ga
Hi there,
I have a server set up of galaxy. I would like to have a system setup where
people can login via their active directory name and then use their mounted
share drive to download processed data from the galaxy server.
I saw that it is possible via apache to login through the AD, but will t
Hi eveybody,
Is there a way in the code of Galaxy, to force the users to use "link to files
without copying in Galaxy" by hiding the "copy files into Galaxy" option in the
interface, when they add datasets in their library? We want to avoid users to
click on "copy files into Galaxy" by mistake.
Thanks a lot for the answer !
kind regards,
Nicolas Cybulski
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hello all,
We have a transcript classification tool named CNCI, that published on
NAR August 6 2013, and the title of this article is "Utilizing sequence
intrinsic composition to classify protein-coding and long non-coding
transcripts". The source code is writen by python, and can be do
On Wed, Nov 27, 2013 at 9:02 PM, Greg Von Kuster wrote:
>
> Hello Peter,
>
> I've done a significant amount of re-engineering of the
> Tool Shed's install and test framework over the past 2
> weeks, so the results you are seeing are probably a
> reflection of some broken peices during the time fra
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