Hello all,
The newly developed blast+ wrappers seem to be very useful, but it seems
like they do not contain the function to blast against remote servers
instead of installing the databases locally.
Am I missing something there? I need to do a remote search for a sequence
within galaxy instance
On Wed, Mar 19, 2014 at 6:42 AM, Nilaksha Neththikumara
nilakshafree...@gmail.com wrote:
Hello all,
The newly developed blast+ wrappers seem to be very useful, but it seems
like they do not contain the function to blast against remote servers
instead of installing the databases locally.
Am I
On Tue, Mar 18, 2014 at 7:10 PM, John Chilton jmchil...@gmail.com wrote:
Hi Peter,
Thanks for the bug report. It looks like if requests is available to
the framework these unicode errors go away (it doesn't have to fall
back on my poor attempt to provide a similar interface).
Hi all,
I am trying to write a tool that based on user criteria will run a different
script.
In the code below, If I select Use_Snapshot, I see the right interface but
somehow galaxy tries to execute the #else part and look for “m” input
parameter. The example I have seen in documentation is
Hi all,
I am trying to write a tool that based on user criteria will run a different
script.
In the code below, If I select Use_Snapshot, I see the right interface but
somehow galaxy tries to execute the #else part and look for “m” input
parameter. The example I have seen in documentation is
Hi,
I wanted to use bowtie2 and tophat2 locally. I remembered you have
instructions about how to set up the library here, but it is not accessible
any more.
https://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
Can you direct me to the right page or send me the documents please?
Thanks,
Hi all,
I followed the instruction on
https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer and
managed to migrate to a postgresql on a Ubuntu machine. However when I tried on
a CentOS 6.5, it failed.The steps are:
1. Create psql user galaxy: under psql prompt,
Hello Huayan,
I don't know why the wiki page disappeared and I will investigate it. In
the meantime I have found a cached copy for you:
http://webcache.googleusercontent.com/search?q=cache:SWWpt6XsmCkJ:https://wiki.galaxyproject.org/Admin/NGS%2520Local%2520Setup+cd=1hl=enct=clnkgl=us
Martin,
Hello again Huayan,
the page got renamed and redirect was not in place. I have put it there and
the new page has even more info on it! :)
thank you for using Galaxy!
Martin
On Wed, Mar 19, 2014 at 10:18 PM, Martin Čech mar...@bx.psu.edu wrote:
Hello Huayan,
I don't know why the wiki page
Thanks Martin!
One more question, I want to install all the migrated tools from stage 9,
that is NGS tools to my local galaxy. I tried but always got some problems.
Do you have the instructions on wiki too?
Thanks,
Huayan
On Thu, Mar 20, 2014 at 10:27 AM, Martin Čech mar...@bx.psu.edu wrote:
Hi Saba,
there is a syntax error in the line of the #if. Please add : at the end and
report whether the error still occurs.
All the best, Jens
Von: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Im Auftrag von Saba Sehrish
Gesendet: Mittwoch, 19. März 2014
Thanks a lot for the information. :) I'm new to the field so get confused
at times. I started downloading the NCBI databases locally, but I have two
questions.
1) There is no proper updating process for the locally installed NCBI
databases. (according to my knowledge) So it seems I have to re
Hi Martin,
Actually I want a NGS Toolbox Beta tool panel exactly like the
usegalaxy.org. How can I achieve this?
I found myself looking for the tools and put them to tool_conf.xml which is
very tedious.
Is there a better way to do it?
Best,
Huayan
On Thu, Mar 20, 2014 at 11:43 AM, Huayan Gao
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