You don't need a full PBS server on that machine, just the client libraries and
configuration. i.e. if you can run 'qstat' from machine A and have it return
the queue on machine B, that should be all you need.
We asked the IT guys they did just that :) now qsub works fine from
machine A!
If they used a package install, I think the DRMAA libs for torque are normally
separate. For instance:
http://pkgs.org/download/torque-drmaa
If going from source, you can enable DRMAA compilation with --enable-drmaa; I
don't recall if that is on by default (I don't think it is).
chris
On
Thanks a lot Chris, actually we found another place where we found rpms
for PBS Pro:
http://apps.man.poznan.pl/trac/pbs-drmaa
And it works now! :D
Have a great weekend,
L-A
Le 17/02/2012 17:07, Fields, Christopher J a écrit :
If they used a package install, I think the DRMAA libs for torque
Re: PBSPro RPMs, that's actually good to know, we will likely need use of that
here as well.
chris
On Feb 17, 2012, at 10:30 AM, Louise-Amélie Schmitt wrote:
Thanks a lot Chris, actually we found another place where we found rpms for
PBS Pro:
http://apps.man.poznan.pl/trac/pbs-drmaa
And
Hi Nate,
Yeah, looks like I have no choice...
I'll try to negociate with the IT guys to run the runner on machine B.
Thanks for all the information!
BTW, out of curiosity, is submitting jobs across machines possible with
Torque?
Best,
L-A
Le 30/01/2012 18:20, Nate Coraor a écrit :
On
On Feb 1, 2012, at 10:09 AM, Louise-Amélie Schmitt wrote:
Hi Nate,
Yeah, looks like I have no choice...
I'll try to negociate with the IT guys to run the runner on machine B.
You don't need a full PBS server on that machine, just the client libraries and
configuration. i.e. if you can
Hi Nate,
Thanks for the info!
I'm trying to understand how the URL for DRMAA works but I don't
understand how we can set it so it uses a different machine.
Our Galaxy runner runs on machine A and the cluster is on machine B,
where do I put B in the URL?
In the wiki there is this example:
On Jan 30, 2012, at 7:37 AM, Louise-Amélie Schmitt wrote:
Hi Nate,
Thanks for the info!
I'm trying to understand how the URL for DRMAA works but I don't understand
how we can set it so it uses a different machine.
Our Galaxy runner runs on machine A and the cluster is on machine B,
On Jan 30, 2012, at 12:07 PM, Louise-Amélie Schmitt wrote:
Hi Nate,
Thanks for the leads!
But setting DRMAA_LIBRARY_PATH means I'm in trouble since the libraries are
on machine B which is maintained by our IT dept. I cannot access them from
machine A.
Is it a desperate situation?
On Jan 16, 2012, at 5:22 AM, Louise-Amélie Schmitt wrote:
Hello,
We want to move Galaxy's jobs from our small TORQUE local install to a big
cluster running PBS Pro.
In the universe_wsgi.ini, I changed the cluster address as follows:
default_cluster_job_runner = pbs:///
to:
Hello,
We want to move Galaxy's jobs from our small TORQUE local install to a
big cluster running PBS Pro.
In the universe_wsgi.ini, I changed the cluster address as follows:
default_cluster_job_runner = pbs:///
to:
default_cluster_job_runner = pbs://sub-master/clng_new/
where sub-master is
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