Hello Liisa,
The current version of MACs used with Galaxy is 1.3.7.1. Currently,
newer versions are known to not work with the existing wrapper. At this
time we can't give a estimate about when we would update, but it is
something we would like to address.
Best,
Jen
Galaxy team
On 6/3/11 8
On Thu, Jun 2, 2011 at 10:53 AM, Peter Cock wrote:
>
> Now that I have a local Blast2GO database, I'll be able to try out
> b2g4pipe on some bigger XML files (without having to wait ages).
>
It turns out that Blast2GO haven't fixed a Java heap space problem
with their parser and large NCBI BLAST+
Hi,
I'm trying to use macs in my local Galaxy instance but am having
difficulties. I have macs 1.4.0rc2 20110214 (Valentine) installed. I get
macs: error: no such option: --lambdaset
I checked documentation for Galaxy Dependencies but no version is
mentioned for macs (
https://bitbucket.org/gala
Holger Klein wrote:
> Dear all,
>
> for our galaxy setup I have to use an SMTP server which requires
> authentication. Since I didn't find any documentation about galaxy's
> capabilities in that regard, I'd like to ask you either for pointers or
> a hint, if and how this can be handled.
>
> For t
Le 03/06/2011 15:19, Peter Cock a écrit :
2011/6/3 Louise-Amélie Schmitt:
Hi
I just blew everything up, I have no idea why. Galaxy doesn't start anymore.
When I run the run.sh script, it stops after loading the converters and just
crashes. Here's the traceback:
Traceback (most recent call last
2011/6/3 Louise-Amélie Schmitt :
> Hi
>
> I just blew everything up, I have no idea why. Galaxy doesn't start anymore.
> When I run the run.sh script, it stops after loading the converters and just
> crashes. Here's the traceback:
>
> Traceback (most recent call last):
> File "/home/galaxy/galaxy-
On Jun 3, 2011, at 5:03 AM, Peter Cock wrote:
> On Thu, Jun 2, 2011 at 6:39 PM, Greg Von Kuster wrote:
>>
>> On Jun 2, 2011, at 1:29 PM, Nate Coraor wrote:
>>
>>> Peter Cock wrote:
Hi all,
Something I've not needed to do until now is define a new file format
in Galaxy. I u
Hey,
I am guessing that the disk space on your Galaxy hosted machine is empty.
Check df -h on your shell
HTH, Vipin
Hi
>
> I just blew everything up, I have no idea why. Galaxy doesn't start
> anymore. When I run the run.sh script, it stops after loading the converters
> and just crashes. Here's
Hi
I just blew everything up, I have no idea why. Galaxy doesn't start
anymore. When I run the run.sh script, it stops after loading the
converters and just crashes. Here's the traceback:
Traceback (most recent call last):
File "/home/galaxy/galaxy-dev/lib/galaxy/web/buildapp.py", line 82,
Le 02/06/2011 21:23, Nate Coraor a écrit :
Louise-Amélie Schmitt wrote:
On Thu, 2 Jun 2011 11:48:55 -0400, Nate Coraor wrote:
Greg Von Kuster wrote:
Hello Louise,
I've CC'd Nate on this as he may be able to help - although no
guarantees. I'm not expert enough in this area to know where to l
Dear all,
for our galaxy setup I have to use an SMTP server which requires
authentication. Since I didn't find any documentation about galaxy's
capabilities in that regard, I'd like to ask you either for pointers or
a hint, if and how this can be handled.
For the smtp_server variable in universe_
Hi Peter,
I'll implement this changes next week.
Thanks,
Dave C
On Thu, Jun 2, 2011 at 4:00 AM, Peter Cock wrote:
> Hi all,
>
> I have a couple of minor suggestions for improving the website
> http://galaxy.psu.edu/gcc2011/Home.html
>
> First, please fill in a meaningful HTML titles since that
On Thu, Jun 2, 2011 at 6:39 PM, Greg Von Kuster wrote:
>
> On Jun 2, 2011, at 1:29 PM, Nate Coraor wrote:
>
>> Peter Cock wrote:
>>> Hi all,
>>>
>>> Something I've not needed to do until now is define a new file format
>>> in Galaxy. I understand the basic principle and defining a subclass in
>>>
Hi all,
Are there any guidelines on tool names and lengths? There is a tendency
due to the way the tool name and description are run together in the left
hand pane listing to write the description as an extension of the name:
e.g.
Name: Select
Description: lines that match an expression
Many of
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