For my sample forms I have fields for Sample type, concentration, run type,
and read length.
I greatly appreciate your help Greg. If you have any other questions let me
know.
Thanks,
Joe
On Tue, Jun 7, 2011 at 2:56 PM, Greg Von Kuster wrote:
> Hello Joe,
>
> Can you send me your csv file?
>
Hello Joe,
Can you send me your csv file?
Thanks!
On Jun 7, 2011, at 10:45 AM, Joe Cruz wrote:
> Hello Everyone,
>
> I wanted to ask if anyone has experience successfully importing sample
> information through a csv file.
>
> I know there is an issue already created for csv file import, whic
> Based on the naming convention of the other outputs (and the output files
> from cuffdiff),
> I think the label of the first one should be renamed to "CDS Expression" only
> (assuming the relevant input file "cds_exp.diff").
Correct. That said, I've been planning to reorder and rename the Cuff
Hello,
I am working on a tool that should load a set of selected files from a
group folder. The interface should only display the files in the
selected group folder.
I tried to use the code below to read the files as options from an
external .xml file in the tool-data directory based on the gr
Hi all,
Jeremy Goecks wrote, On 06/07/2011 01:25 PM:
>
> If you modify the Cufflinks/compare/diff wrappers to be compatible
> with 1.0.2/3, please either put them in the toolshed or send them to
> me and I'll incorporate them into the Galaxy code base.
>
We are actually working on customized ve
Assaf,
Thanks for the very helpful information. We largely sync our tool wrappers to
the tool version used on our public server. We're currently running v1.0.1 of
Cufflinks on main; hence, as you discovered, the wrappers are compatible with
that version of Cufflinks but (sadly) incompatible wit
So I tryed an other way to access the value :
${clean_pairends.clean_pairends_select} == "y"
but it's not working either ... I tryed to add a label to the data like
this :
label="${clean_pairends.clean_pairends_select}">
${clean_pairends.clean_pairend
Hello Everyone,
I wanted to ask if anyone has experience successfully importing sample
information through a csv file.
I know there is an issue already created for csv file import, which I left a
comment earlier:
https://bitbucket.org/galaxy/galaxy-central/issue/398/csv-import-of-sample-informat
Hello Everyone,
I would like to add a link to the Sequencing Requests page and modify it
further in the future but I'm unsure of how to go about doing that, since
there is no static html file for the webpage (at least none that I can find)
and I'm a newbie when it comes to web application developm
Thanks for the answer,
Still considering the number of outputed files problem. In my script I
know that if
a cleaning option is set 2 other files will be created, so I check if
the option is asked by the
user and try this :
#if $clean_pairends.clean_pairends_select=="y":
#
Thanks for the answer,
so I tryed to write a wrapper, but the main script is not recognize.
When I'm calling my wrapper in the xml file, I don't have to specify
the full path but then from my wrapper if I want to call my main script
I can't if this one is not on the PATH ? the wrapper current di
I can only see the usage of the tag into the
to change format, is that correct ?
I tryed :
format="interval"/>
but even if the option is not selected, I have 2 outputs !
Am I missing something with the tag ? Because it looks to me
that it is pretty limited t
Thanks this is what I was looking for !!
I succeded to make it work when checking the value on a simple param
using the name like this
label="Quality reads file (if input is a fasta)" />
...
qual_file != None
however when I'm in a conditional tag like this, I tryed :
On Tue, Jun 7, 2011 at 11:38 AM, Mariette wrote:
>
> I can only see the usage of the tag into the
> to change format, is that correct ?
>
On re-reading the wiki page, yes, I think you are right. I should have
said with , as in tools/filters/sff_extractor.xml
Peter
On Tue, Jun 7, 2011 at 10:56 AM, Mariette wrote:
>
> Thanks for the answer,
> Still considering the number of outputed files problem. In my script I know
> that if
> a cleaning option is set 2 other files will be created, so I check if the
> option is asked by the
> user and try this :
>
>
>
On Tue, Jun 7, 2011 at 9:24 AM, Mariette wrote:
>
> Thanks for the answer,
>
> so I tryed to write a wrapper, but the main script is not recognize.
> When I'm calling my wrapper in the xml file, I don't have to specify
> the full path but then from my wrapper if I want to call my main script
> I c
Hi all,
I thought the new repository based tool shed was still in beta?
However, http://community.g2.bx.psu.edu/ and also
http://usegalaxy.org/community are both now redirecting
to http://toolshed.g2.bx.psu.edu/ and that does seem to be
the new version.
If so, what happened to the tools I submitt
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