Hi Galaxy developers,
I'd like to integrate a SOAP-based data resource in Galaxy and I'm
exploring ways to manage the SOAP session so that a user won't have to
resubmit their credentials every time they want to pull data.
Here are things I've thought of:
1) Wrap an independent web page around the
On Nov 25, 2011, at 6:52 AM, Ivan Merelli wrote:
> Hi,
>
> I'm trying to use rgenetics in galaxy, but I have
> some problem in installting rpy-1.0.3 with R-2.13.1.
>
> I found this guide, which is about the same problem of mine:
> http://gmod.827538.n3.nabble.com/Rpy-1-0-3-and-R-2-13-1-td3359590
That symlink should not be necessary. Can you remove it and send me the
complete paste log when you attempt to start your tool shed server?
On Nov 25, 2011, at 8:23 AM, Louise-Amélie Schmitt wrote:
> Hello Greg,
>
> This is precisely because we got the error that I added that section, like I
Hello everybody,
I am trying to run my tool Vispa but every time i try to i got this error
messages:
An error occurred running this job:
/home/galaxy/galaxy-dist/tools/vispa/main.bash: line 13: ./parser_v.2.sh: No
such file or directory
/home/galaxy/galaxy-dist/tools/vispa/main.bash: line 16
Hello Greg,
This is precisely because we got the error that I added that section,
like I mentioned earlier, but it didn't change anything. I will remove
it again then.
Do you have any other idea that we could explore? Do you need other files?
Ah, I forgot to mention that at first start, it w
Hello Jan,
There a several free or free-trial tools available for doing this - I've copied
a couple of links here from a google search. I know there a some in the Galaxy
community that have done this, but I'm not sure if a certain tool may be the
best choice, or if all work well.
Converting d
Hello Louise-Amelie,
I believe the problem is caused by the inclusion of the following settings in
your community_webapp.ini file. This sections should not be included in the
tool shed config, so if you remove it things should work. Let me know if you
bump into other issues. I apologize for
Hi,
I'm trying to use rgenetics in galaxy, but I have
some problem in installting rpy-1.0.3 with R-2.13.1.
I found this guide, which is about the same problem of mine:
http://gmod.827538.n3.nabble.com/Rpy-1-0-3-and-R-2-13-1-td3359590.html
but didn't work for me (although the part about the
modu
Hi,
I had a local instance running with the basic SQlite database setup running.
Now I've changed to postgresql and all my users and histories aren't available.
Is there a way of migrating the old data to the new database ?
Best, Jan
___
Dipl. Bio
Hello Greg
Please find attached the file you asked for. Just in case, I also sent
you the run_community.sh script we use to start the toolshed.
Thanks a lot,
Louise-Amélie
Le 25/11/2011 00:36, Greg Von Kuster a écrit :
Hello Louise,
Can you send me your community_wsgi.ini file? I assume y
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