Re: [galaxy-dev] Which css file does welcome.html use?

2012-07-06 Thread Jeremy Goecks
The CSS files used by Galaxy, including base.css, are under ./static/june_2007_style/blue . There is a route used to point to the correct location for CSS data. Best, J. On Jul 6, 2012, at 5:28 PM, Dorset, Daniel C wrote: > OK, this is ostensibly a simple question. However, I can’t find the CS

[galaxy-dev] Which css file does welcome.html use?

2012-07-06 Thread Dorset, Daniel C
OK, this is ostensibly a simple question. However, I can't find the CSS file that welcome.html is using. In the HTML file, there's this line: However, I don't see a directory named "style" anywhere in the galaxy directory tree. When I search for "base.css," from the root Galaxy installation d

[galaxy-dev] pbs_python issues

2012-07-06 Thread Iry Witham
I am having an issue with pbs_python loading, but not submitting jobs to the cluster. The first issue is that when I ran 'LIBTORQUE_DIR=/usr/local/lib/ python scripts/scramble.py –e pbs_python' it failed to generate the pbs_python egg in the /galaxy-dist/eggs/ directory. Secondly I copied the

Re: [galaxy-dev] can not login to workflows after postgresql setup

2012-07-06 Thread Dannon Baker
For mail configuration, see the "Mail and Notification" section in your universe_wsgi.ini -- all you need to do is specify an SMTP server that Galaxy can use. Regarding the invalid password, keep in mind that this would be your previously registered password (from when you were using the sqlite

Re: [galaxy-dev] can not login to workflows after postgresql setup

2012-07-06 Thread J.W.F.van_der_Heijden
Hi, Any ideas yet on how to configure my mail in galaxy? Kind regards Jaap From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] on behalf of j.w.f.van_der_heij...@lumc.nl [j.w.f.van_der_heij...@lumc.nl] Sent: Friday, July 06,

Re: [galaxy-dev] can not login to workflows after postgresql setup

2012-07-06 Thread J.W.F.van_der_Heijden
Hi all, I tried to reconnect with the SQLite database but this time when I try to log in to use workflows it says that my password is invalid. When I try to reset it with the forgotten password option I get this message again: Mail is not configured for this Galaxy instance. Please contact an

[galaxy-dev] bed files - The uploaded binary file contains inappropriate content

2012-07-06 Thread Robert Chase
Hello, We tried to upload a directory of files to our local data library and all uploads were successful except for one. The .bed file did not upload and gave an error message; The uploaded binary file contains inappropriate content. We would like to be able to share our data set with other resear

[galaxy-dev] Tool test question

2012-07-06 Thread christopher fletez-brant
Dear Dev List, I am currently writing tests for a tool I am developing and am coming up short in understanding why it's failing. Using the test data, I can generate output identical to the output provided for testing every time I run the tool from my local Galaxy server. However, when I run the