Galaxy July 20, 2012 Distribution News Brief
*Complete News Brief
http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_07_20*
*Highlights:
http://wiki.g2.bx.psu.edu/News/Jul202012%20Distribution%20News%20Brief*
*
*Freebayes *has moved from the /Galaxy distribution to the Galaxy's
Main
Hi Brian,
A couple of days ago, smcmanus https://bitbucket.org/smcmanus pushed the
following change to the repo:
Tools can now specify their own handling of stderr and stdout regular
expressions as well as exit code ranges.
Hi,
When I started Galaxy today I lost more than half of my processed data, weeks
of work ;-(. I had a look at the deleted dataset but nothing, If I had erased
them erroneously I wouldn't have purge them Is it possible that there was a
problem with the server? Or do a kind of
may be some other people would find this a useful enhancement:
https://bitbucket.org/galaxy/galaxy-central/issue/778/add-new-slurm-drmaa-runner-to-galaxy
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I found the guid for the tool and tried the usual method of configuring
galaxy to use it via drmaa. With your example, it would be
toolshed.g2.bx.psu.edu/repos/devteam/freebayes/freebayes/0.0.2 =
drmaa://-l nodes=1/
But this didn't have any effect. It still ran on the localhost. I guess
no
Hello Ira and Galaxy-dev followers,
Going forward from the current Galaxy release, mercurial change set revision
ec29ce8e27a1 available in the Galaxy dist repository, the main Galaxy tool shed
will track the Galaxy releases and the galaxy-dist repository on bitbucket.
This announcement is
Hi David,
If using the actual tool id (guid) does not work, then it's likely that the job
runner code needs to be fixed to correctly handle tools installed from a tool
shed. I've created a ticket to get this resolved which you can follow so that
you'll receive status changes on the issue.
