[galaxy-dev] Extra authentication

2013-06-27 Thread shashi shekhar
Hi, i have installed local instance of galaxy in my  linux system. i want to add an extra  authentication  mechanism before saving user information into database in which file i have to do modification .? regards shashi ___ Please keep

[galaxy-dev] Any Galaxers working on GenomeSpace, going to Oslo?

2013-06-27 Thread Samuel Lampa
Hi, At UPPMAX, are interested both in Galaxy, and the GenomeSpace project[1], and wanted to check if there are people on the Galaxy team or other galaxers who are involved in the GenomeSpace project, that will be in Oslo next week? If so, I would be interested to meet up! BestRegards //

[galaxy-dev] Tool Dependency Check for eXpress - requirements syntax incorrect?

2013-06-27 Thread Adam Brenner
Howdy, One of our users is running the eXpress package under NGS: RNA Analysis - eXpress -- galaxy/dist/tools/ngs_rna/express_wrapper.* I noticed the syntax for express_wrapper.xml has the following: requirement type=binaryeXpress/requirement any reason why it was set to that, as opposed

[galaxy-dev] Getting FATAL: sorry, too many clients already in postgres database

2013-06-27 Thread Anthonius deBoer
Hi,I am getting the error "FATAL: sorry, too many clients already" in in my local Galaxy instance in the POSTGRES database log.I have set max_connections = 1000 in already in "postgresql.conf" and STILL get this error...I was running a Flowcell with about 96 samples and a workflow with about 50

Re: [galaxy-dev] Tool Dependency Check for eXpress - requirements syntax incorrect?

2013-06-27 Thread Adam Brenner
James, Thanks for the response. I had some sort of typo in my express_wrapper.xml file and all is well now. It is now sourcing the correct file. I went ahead and submitted a pull request to have eXpress updated to package, instead of binary:

[galaxy-dev] history item status not updating

2013-06-27 Thread Robert Baertsch
I submitted a workflow that in turn submits a drm job to sun grid engine. The queue had an error (probably due to a problem with automount). Traceback (most recent call last): File /inside/depot4/galaxy/lib/galaxy/jobs/runners/__init__.py, line 60, in run_next method(arg) File

[galaxy-dev] Managing a sequencer

2013-06-27 Thread Lee Katz
Hi, I am wondering how the nglims Manage sequencers and external services works. I want to add our MiSeq such that all future runs show up in Galaxy as data sets. Is this the way to do it? When I use this menu to add our sequencer it asks for a username, ip address, password, etc. I am not

Re: [galaxy-dev] history item status not updating

2013-06-27 Thread Robert Baertsch
ignore this last post On Jun 27, 2013, at 3:09 PM, Robert Baertsch wrote: I submitted a workflow that in turn submits a drm job to sun grid engine. The queue had an error (probably due to a problem with automount). Traceback (most recent call last): File