Hi all,
So in my wrapper for my trimming tool, sickle, I only allow fastq,
fastqsanger, fastqillumina, or fastqsolexa input data. However, if a
fastqsanger file's datatype has been erroneously changed to fastqcssanger,
my tool will still show that file in the dropdown for the possible inputs.
Why
On Mon, Mar 23, 2015 at 12:27 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi Dave,
Now that you've fixed some of the test back log, the bad
news is this issue I reported last week appears to be a major
regression affecting multiple tools on the Test Tool Shed:
On Thu, Apr 2, 2015 at 10:02 AM, Nikhil Joshi najo...@ucdavis.edu wrote:
Hi all,
So in my wrapper for my trimming tool, sickle, I only allow fastq,
fastqsanger, fastqillumina, or fastqsolexa input data. However, if a
fastqsanger file's datatype has been erroneously changed to fastqcssanger,
Hi all,
Is it possible to use a DataManager (or anything) to allow a user (or
admin) to upload their genome of choice and have it be indexed and be used
as a built-in/cached genome *without* having to go on the command-line?
I.e., only using the Galaxy interface?
- Nik.
--
Nikhil Joshi
Dannon, thanks,
This is on dev at commit 43a94ada37124dde5759b0c94bf25a97ff4da17a
Am running nginx 1.6.2 on RedHat EL 6.6
Python 2.7.8 with uWSGI 2.0.10
I can send my galaxy.ini and nginx.conf to you separately off list.
DT
--
David Trudgian Ph.D.,
Computational Scientist
UT Southwestern
Hi,
When I enabled 'require_login = True' on a galaxy instance running with
NGINX+uWSGI I receive internal server error pages due to a Key error for
File 'lib/galaxy/web/framework/base.py', line 356 in path
return self.environ['SCRIPT_NAME'] + self.environ['PATH_INFO']
KeyError: 'SCRIPT_NAME'
Hi Nikhil,
Have a look at
https://toolshed.g2.bx.psu.edu/view/devteam/data_manager_fetch_genome_dbkeys_all_fasta
to add a new genome/fasta. Once you have the genome entry, then you can use
additional Data Manager to make tool specific (bwa, samtools, etc) indexes.
Thanks for using Galaxy,
On Wed, Apr 1, 2015 at 6:50 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Wed, Apr 1, 2015 at 11:29 AM, Saket Choudhary sake...@gmail.com wrote:
On 1 April 2015 at 02:06, Peter Cock p.j.a.c...@googlemail.com wrote:
On Tue, Mar 31, 2015 at 6:12 PM, John Chilton jmchil...@gmail.com wrote:
I
