Re: [galaxy-dev] not sure what I can do about this...

: Peter Cock [mailto:p.j.a.c...@googlemail.com] Sent: May-26-16 3:32 AM To: Fernandez Edgar <edgar.fernan...@umontreal.ca>; Nate Coraor <n...@bx.psu.edu> Cc: galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] not sure what I can do about this... Sorry Edgar, It looks like something els

Re: [galaxy-dev] not sure what I can do about this...

galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] not sure what I can do about this... Hi Edgar, Are your Galaxy server AND your cluster are all running Oracle Linux 6? If yes, my guess about the cluster using an older version of Linux compared to the Galaxy server is unrelated. Peter On Tue,

Re: [galaxy-dev] not sure what I can do about this...

Hi Edgar, Are your Galaxy server AND your cluster are all running Oracle Linux 6? If yes, my guess about the cluster using an older version of Linux compared to the Galaxy server is unrelated. Peter On Tue, May 24, 2016 at 7:47 PM, Fernandez Edgar wrote: > Hello

Re: [galaxy-dev] not sure what I can do about this...

-GAUDRY, bureau X-210 I  Bur. : 1-514-343-6111 poste 16568 -Original Message- From: Peter Cock [mailto:p.j.a.c...@googlemail.com] Sent: May-24-16 2:29 PM To: Fernandez Edgar <edgar.fernan...@umontreal.ca> Cc: galaxy-...@bx.psu.edu Subject: Re: [galaxy-dev] not sure what I can do

Re: [galaxy-dev] not sure what I can do about this...

-16 8:48 AM To: 'galaxy-...@bx.psu.edu' <galaxy-...@bx.psu.edu> Subject: RE: [galaxy-dev] not sure what I can do about this... Hey Guys, I’ve fixed my first problem with the environment. But I’m still getting the second one. Also, did any of you guys try to deploy galaxy with Microsoft Azur

Re: [galaxy-dev] not sure what I can do about this...

Hi Fernandez, We saw something very like that with mixed versions of Linux, specifically our Galaxy head node where pysam was installed had CentOS 7, but the node where Galaxy was trying to run the metadata detection was CentOS 6. Unfortunately I do not have a record of the exact traceback - but

Re: [galaxy-dev] not sure what I can do about this...

formation et de la Communication > > *Université de Montréal* > > > > PAVILLON ROGER-GAUDRY, bureau X-210 > > ( Bur. : *1-514-343-6111 poste 16568* > > > > > > *From:* Fernandez Edgar > *Sent:* May-18-16 2:00 PM > *To:* galaxy-...@bx.psu.edu >

Re: [galaxy-dev] not sure what I can do about this...

:00 PM To: galaxy-...@bx.psu.edu Subject: RE: [galaxy-dev] not sure what I can do about this... Hey Guys, Hope everyone is doing well. So I’m back at galaxy v16.01 I’m having a small problem. My python system version is 2.6.6 So I installed python version 2.7.8 from Software Collection Library

Re: [galaxy-dev] not sure what I can do about this...

Hey Guys, Hope everyone is doing well. So I’m back at galaxy v16.01 I’m having a small problem. My python system version is 2.6.6 So I installed python version 2.7.8 from Software Collection Library release 1.2 packages for Oracle Linux 6

Re: [galaxy-dev] not sure what I can do about this...

Hi Edgar, please download the latest version of tbl2asn from here: ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/ and replace it with your version, this will probably fix your error. Cheers, Bjoern Am 29.09.2015 um 14:05 schrieb Fernandez Edgar: > Hello Gents, > >

[galaxy-dev] not sure what I can do about this...

Hello Gents, So someone asked me to install the package Prokka on Galaxy. I did and everything went well! However, the following error comes up, when they try to work with Prokka: Fatal error: Exit code 2 () [tbl2asn] This copy of tbl2asn is more than a year old. Please download the current

Re: [galaxy-dev] not sure what I can do about this...

[mailto:bjoern.gruen...@gmail.com] Envoyé : September-29-15 8:10 AM À : Fernandez Edgar; galaxy-...@bx.psu.edu Objet : Re: [galaxy-dev] not sure what I can do about this... Hi Edgar, please download the latest version of tbl2asn from here: ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program

Re: [galaxy-dev] not sure what I can do about this...

On Tue, Sep 29, 2015 at 1:12 PM, Fernandez Edgar wrote: > Hello Björn, > > Thank you for answering! > When I installed Prokka from the Galaxy ToolShed, all the dependencies were > installed too. > tbl2asn is one of those dependencies... > How would I replace it? > >

Re: [galaxy-dev] not sure what I can do about this...

nvoyé : September-29-15 10:27 AM À : Peter Cock; Fernandez Edgar; Nicola Soranzo (TGAC) Cc : Björn Grüning; galaxy-...@bx.psu.edu Objet : Re: [galaxy-dev] not sure what I can do about this... I will make a new package for tbl2asn. Our lab is not too happy that tbl2asn expires and causes lots of is