Hi all,
We were tracking the galaxy master branch on our local server and are looking
to migrate to v16.01.
The galaxy processes are managed bij supervisor as shown here (
https://wiki.galaxyproject.org/Admin/Config/Performance/Scaling).
After updating all dependencies in our venv we tried to
ere might be other errors as well
>
>
> Regards, Hans-Rudolf
>
> I am not sure, whether this
> On 01/26/2016 01:22 PM, Matthias De Smet wrote:
>> Hi all,
>>
>> I’m trying to develop a tool that lets you select a file on the server.
>> I’m using the dynami
user can select which datasets she/he wants to import.
>
>
> And back to your original question: Yes, it is possible to create interactive
> tools. Check out the 'dynamic_options' examples on
>
> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
>
>
> Regards, Hans-Rudol
Hi All,
I’m trying to implement a tool that get a list of options through the
“dynamic_options” tag. I try to filter the options that get returned with
another param, but it doensn’t seem to work.
my tool xml looks like this
from the archive to a data library
test.sh > $log
h> het volgende
> geschreven:
>
> Hi Matthias
>
> I don't think you can do that...I would delegate the filtering to the
> 'list_files' function, i.e. by calling:
>
> list_files(archive_source,query)
>
>
> Regards, Hans-Rudolf
>
>
> On 01/27/2
> On 01/27/2016 10:29 AM, Matthias De Smet wrote:
>> Hi Hans-Rudolf
>>
>> Thanks again, you’re a lifesaver!
>> Any suggestions on how I could eliminate the tag, as the wiki states
>> it’s deprecated?
>
> well, it has been 'deprecated' for many years now.
Hi again
I’m trying to create a tool that interacts with galaxy through the API. For
this, I need to get the users API key (or equivalent) en the domain name of the
Galaxy host.
The purpose of this tool is to get data and put it in a data library, so I
suppose I need to use the API. Or is
>
> Hi
>
> I’m trying to put together a tool + dependency package to use umi-tools
> (https://github.com/CGATOxford/UMI-tools) from Galaxy.
> I’m at a loss on how I should organise this.
>
> The package is available from either github or pip. Which one is preferable
> to use? How do I make
Hi All!
Thanks for chiming in! I’ll give the conda recipe approach a go, this seems to
be the easiest way to go, and the most futureproof!
Thanks!
M
> Message: 1
> Date: Tue, 5 Jul 2016 06:56:00 +
> From: Matthias De Smet <matthias.des...@ugent.be>
&g
Hi all,
We’re looking to migrate our Galaxy instance from a VM based solution to a
docker based solution. Therefore, we need to move all our user and reference
data. What is the best possible solution to migrate all data and change the
path of said data in the database?
Thanks!
M
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