Hi Assaf,
On Thu, Apr 28, 2011 at 7:55 PM, Assaf Gordon wrote:
> Leandro Hermida wrote, On 04/28/2011 08:55 AM:
> > Hi galaxy developers,
> >
> > Just want to double-check, there is no way to import some kind of galaxy
> tool context info into python code you are running for a tool?
>
> Nothing
Hi Joachim,
Your hg environment looks good, so there must be something else going on. I
assume you are using only the Galaxy server for handling requests, but please
confirm this. Is the following method available on line # 1972 of the file
~/lib/galaxy/web/controllers/library_common.py?
def
Dannon,
First of all, thank you for your reply !
In the datatypes_conf.xml, I attribute 'max_optional_metadata_filsize'
but it's still very long... (althought I feel it getting better).
However, when I run 'top' on the cluster computer's terminal, I see a
python script running on the master
Yes, metadata can be set on a separate node. To do this you'll want to set the
following value in your universe_wsgi.ini:
set_metadata_externally = True
-Dannon
On Apr 29, 2011, at 9:16 AM, Marc Bras wrote:
> Dannon,
>
> First of all, thank you for your reply !
>
> In the datatypes_conf.xml
Hi Leandro,
Leandro Hermida wrote, On 04/29/2011 06:17 AM:
> But I have one complication I guess. My tool is already running a Python
> code file to dynamically create a drop-down menu using the dynamic_options
> attribute a la:
>
>
> ...
>
>
> In this function my_options I would need the t
Leandro Hermida wrote:
>
> Thanks Nate for the info. I would like to add though that this might not
> work for many organizations. Many places have for example:
>
> lhermida as username
> leandro.herm...@domain.org as the email address
This is okay, the username does not need to match the emai
Leandro Hermida wrote:
> On Thu, Apr 28, 2011 at 5:52 PM, Nate Coraor wrote:
>
> > Leandro Hermida wrote:
> > > Hi everyone,
> > >
> > > Has anyone actually properly implemented remote_user_logout_href in
> > Galaxy
> > > with external HTTP authentication? As probably those who have tried
> > kn
Assaf Gordon wrote:
> I'll rephrase my question:
> Is "cython" going to be a standard requirement for Galaxy (and needs to be
> manually installed on our production servers), or is this just a temporary
> thing, or is it going to be an automatic egg thing ?
No, that's a mistake. I should have a
Here is the problem, you must have something configured incorrectly in your
apache server that is not properly handling the request.
> serving Galaxy through Apache
On Apr 29, 2011, at 9:10 AM, Greg Von Kuster wrote:
> Hi Joachim,
>
> Your hg environment looks good, so there must be something
Hi Assaf,
Nate has just committed a fix so this shouldn't be required now. Thanks for
the report!
K
On Thu, Apr 28, 2011 at 4:28 PM, Assaf Gordon wrote:
> I'll rephrase my question:
> Is "cython" going to be a standard requirement for Galaxy (and needs to be
> manually installed on our product
Dear Galaxy Team,
Any idea how I can access a specific section of tools from a Galaxy instance
?
For example:
In our Galaxy instance at http://galaxy.tuebingen.mpg.de/, we have a section
called 'Gene Finding'.
Under this we have several sub sections and I would like to invoke a
specific sub sect
Until someone comes up with something better, you could have something
working within a few minutes I imagine if you write them as (eg)
static links somewhere in static/welcome.html for your site?
Interestingly, it looks like if you serve them from outside Galaxy, it
will notice and warn - eg try
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