Hi Team,
I am attempting to get the reports interface for my galaxy server to function.
I have my reports.wsgi.ini configured so:
# HTTP Server --
[server:main]
use = egg:Paste#http
port = 9001
host = 127.0.0.1
use_threadpool = true
Hi Iry
- try different port
- try the actual IP address of your host
Regards, Hans
On 08/24/2012 01:52 PM, Iry Witham wrote:
Hi Team,
I am attempting to get the reports interface for my galaxy server to
function. I have my reports.wsgi.ini configured so:
# HTTP Server
-
Hi galaxy users,
I configured galaxy with external ldap authentification using apache proxy,
so my galaxy users are automatically created in galaxy database.
When I want to configure proftpd to work with galaxy as it is mentionned in
galaxy wiki, authentification fails on the ftp because registere
Hans,
I set the actual IP address and it works.
Thanks,
Iry
On 8/24/12 8:07 AM, "Hans-Rudolf Hotz" wrote:
>Hi Iry
>
> - try different port
> - try the actual IP address of your host
>
>
>Regards, Hans
>
>
>On 08/24/2012 01:52 PM, Iry Witham wrote:
>> Hi Team,
>>
>> I am attempting to get the
Thanks Assaf.
Would anyone know about my question 1? If I install a local version
of Galaxy and connect it to our cluster, where is each user's
(uploaded?) data stored? How will the cluster jobs be able to access
the data?
If anyone has installed galaxy and hooked it up to Sun Grid engine,
I'd
Hi folk,
Do you know any method for reading (the extended) WSGI HTTP headers
from a custom tool?
If I put some debugging lines in
$galaxy/lib/galaxy/web/framework/middleware/xforwardedhost.py, I can
read the HTTP headers I want. But I need to access them under
tools/my_script.py. Is there a way t
On Fri, Aug 24, 2012 at 1:25 PM, mailing list
aka Greg wrote:
> Thanks Assaf.
>
> Would anyone know about my question 1? If I install a local version
> of Galaxy and connect it to our cluster, where is each user's
> (uploaded?) data stored? How will the cluster jobs be able to access
> the data?
Hi,
I wrote a script for dynamically populating a user form. It works but
it's slow. When I checked the Galaxy log, I saw that the method called
by my custom tool's xml is being run twice (the same debugging lines
appear twice in the log, and that happens consistently). Is there any
explanation fo
Hello,
On our local instance of Galaxy jobs are taking an extremely long time to run,
or they are not run at all. In the history it always says "job is waiting to
run", even simple jobs like reformatting text files to be tab delimited. Is
there a way to 1) check the Galaxy job queue, and 2
I cannot speak to the code running twi, but are using a unique_value
filter? The dynamic_options code use to completely lock up our galaxy
server for minutes at a time before I applied this optimization:
https://bitbucket.org/jmchilton/galaxy-central-dynamic-options-fix/changeset/e4856cc362d92f785
On 08/24/2012 05:22 PM, kauerb...@comcast.net wrote:
Hello,
On our local instance of Galaxy jobs are taking an extremely long time
to run, or they are not run at all. In the history it always says "job
is waiting to run", even simple jobs like reformatting text files to be
tab delimited. Is th
On 08/24/2012 06:59 PM, kauerb...@comcast.net wrote:
That's very helpful. Thank you. I'm new to Galaxy. Can you tell me how
to become an 'admin' user and/or change the current admin user?
again, change the settings in "universe_wsgi.ini" by adding your e-mail
(the one you use to log into Ga
Hello,
Could you please tell me if it's possible to run Galaxy with an LSF scheduler,
and if so, how?
Thank you.
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Hello,
Can you tell me how to become an 'admin' user on Galaxy, or else change the
current admin?
Thank you.
-Ken.
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On Fri, Aug 24, 2012 at 9:56 AM, Peter Cock wrote:
> On Fri, Aug 24, 2012 at 1:25 PM, mailing list
> aka Greg wrote:
>> Thanks Assaf.
>>
>> Would anyone know about my question 1? If I install a local version
>> of Galaxy and connect it to our cluster, where is each user's
>> (uploaded?) data sto
on your local instance, please read the following:
http://wiki.g2.bx.psu.edu/Admin/Interface
--Vipin
On 24 August 2012 13:09, wrote:
> Hello,
>
> Can you tell me how to become an 'admin' user on Galaxy, or else change
> the current admin?
>
> Thank you.
>
> -Ken.
>
> _
Hi galaxy team,
I changed my email address in my personal data settings. But it seems
not working.
Deeps
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and other Gala
On Friday, August 24, 2012, greg wrote:
> On Fri, Aug 24, 2012 at 9:56 AM, Peter Cock
> >
> wrote:
> > On Fri, Aug 24, 2012 at 1:25 PM, mailing list
> >
> >
> > aka Greg wrote:
> >> Thanks Assaf.
> >>
> >> Would anyone know about my question 1? If I install a local version
> >> of Galaxy and c
I am seeing some odd behavior with BAM file import from FTP staging directory
where ownership of imported file is retained instead of being changed to galaxy
system user account.
I should note that our site is not using galaxy specific FTP server
configuration, but instead we have configured
I haven't worked with an LSF cluster before, but it looks like it has DRMAA
bindings. That means that you could try setting up a DRMAA galaxy runner :
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster
-Scott
- Original Message -
> Hello,
> Could you please tell me if it's p
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