Dear Galaxy community,
I'm facing a problem in installing a tool from the tool-shed repository for a
while now and I still don't know how to make it.
I'm trying to install deepTools (https://github.com/fidelram/deepTools) into
our Galaxy instance but I never got the tools neither properly insta
On Thu, Nov 28, 2013 at 7:34 PM, Greg Von Kuster wrote:
> Hi Peter,
>
>> But its not all good news - another test is now listed as failing, but with
>> missing test results:
>> http://testtoolshed.g2.bx.psu.edu/view/peterjc/get_orfs_or_cdss/09b5b1af9b8f
>
> The bad data shoud now be eliminated, an
Hi,
I was wondering, if anyone could point me to any resources and that allow the
user to interact with the view of the output of a tool in Galaxy. So for
example, I would like to load an image, draw a region of interest (ROI)
(probably via some js routine) and then store that information in a
Hi,
if we want to include JAVA programs into Galaxy we are usually forced to
hardcode -Xmx4g -Xms3g or similar into the wrapper. Would it make sense
to have something like GALAXY_MEMORY, similar to GALAXY_SLOTS, to obtain
the maximum of allowed memory from the scheduler. With some cheetah
magic we
Hi Stephanie,
> I'm facing a problem in installing a tool from the tool-shed
> repository for a while now and I still don't know how to make it.
> I'm trying to install deepTools
> (https://github.com/fidelram/deepTools) into our Galaxy instance but I
> never got the tools neither properly instal
Peter,
It's good news that the description field is available in tabular format.
That has been the primary reason for using the xml format. The tabular format
allows use of the task parallel feature.
I think you have good default options for output format.
But, I would think we should offe
I was trying to install release ac935c35437a. This one didn't work.
Since the release version you told me about was not the same as the one I
was trying to install, I've tried one more time to install deepTools and
finally installation has worked.
Thank you.
Best,
Stephanie
--
Stephanie Le Gra
