[galaxy-dev] Menu label in toolshed

7;han Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 57 12 27 75 _ INRA-UMR BIOGECO 1202 Equipe Genetique 69 route d'Arcach

[galaxy-dev] Trackster : samtools not found error

interface that uses samtools and it worked. It seems that it's only in trackster that samtools are not found. Do you have an idea to fix it? Best regards Yec'han ======== Yec'han LAIZET Ingénieur Plateforme Genome Transcri

[galaxy-dev] Empty tool panel

what could be the problem? Thanks Yec'han Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 57 12 27 75 _ Plateforme Genome Transcriptome INRA-UMR BIOGECO 1202 Equipe Genetique 69 route d'

Re: [galaxy-dev] Empty tool panel

Hi, my mistake... I got an error in the apache proxy configuration. The "funny" thing is that everything seemed to work excepted the tool panel menu which was empty. Sorry for that and thanks. Yec'han ======== Dr. Yec'

[galaxy-dev] FTP password and web interface password

authenfication as if both passwords are independent. Could you help me to solve the problem? Yec'han Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 57 12 27 75 _ INRA-UMR BIOGECO 1202 Equipe

Re: [galaxy-dev] FTP password and web interface password

a newly created user password but it still does not work. Yec'han Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 57 12 27 75 _ INRA-UMR BIOGECO 1202 Equipe Genetique 69 route d'Arcach

Re: [galaxy-dev] FTP password and web interface password

Hello, does anybody have any idea of what I can do to fix the problem? Maybe an update is required? I currently use the changeset: 11219:5c789ab4144a thanks Yec'han Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 5

Re: [galaxy-dev] FTP password and web interface password

ead of "denied". I don't understand why old accounts can connect whereas new ones cannot although passwords are not PBKDF2$. Yec'han ==== Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 57 12 27 75 _

Re: [galaxy-dev] FTP password and web interface password

= Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: +33 (0)5 57 12 27 75 _ INRA-UMR BIOGECO 1202 Equipe Genetique 69 route d'Arcachon 33612 CESTAS Le 14/03/2014 16:43, Nate Coraor a écrit : Hi Yec'

[galaxy-dev] Trackster error when loading a gff file

atypes/util/gff_util.py by this: transcript_id = line_attrs.get('transcript_id' , 0) You may want to change the default 0 value by something more pertinent... if it is really a bug and not a mistake from myself. Best regards Yec'han ==

[galaxy-dev] Trackster and gff file with multiple chromosome annotations

datatypes/util/gff_util.py", line 65, in __init__ ( interval.chrom, self.chrom ) ) ValueError: interval chrom does not match self chrom: SAGS2 != SAGS1 Thanks Yec'han Yec'han LAIZET Ingenieur Plateforme Genome Transcriptome Tel: 05 57

Re: [galaxy-dev] Trackster and gff file with multiple chromosome annotations

tatypes/util/gff_util.py", line 65, in __init__ ( interval.chrom, self.chrom ) ) ValueError: interval chrom does not match self chrom: scaffold_10 != scaffold_10 Is the gff file not correct? PS : I use the galaxy changeset : 7828:b5bda7a5c345 Yec'han ===

Re: [galaxy-dev] Trackster and gff file with multiple chromosome annotations

I will modify the gff file as you mentioned and update galaxy. Thanks a lot. Yec'han ==== Yec'han LAIZET Ingenieur Plateforme Genome Transcriptome Tel: 05 57 12 27 75 _ INRA-UMR BIOGECO 1202 Equipe Genetiqu

[galaxy-dev] Toolshed bwa wrapper mistake

ave a value Till, with those corrections, the mapping with bwa for Ion Torrent does not seem to work properly. My ouput sam file had only the header in it. Best regards Yec'han ==== Dr. Yec'han LAIZET Ingenieur Bioinformatique Tel: