Re: [galaxy-dev] Galaxy API question: workflow_execute

2011-09-06 Thread Nate Coraor
Dannon Baker wrote: > The 'step' in question is the actual workflow step id, since ordering of > steps in a workflow is flexible and might be changed without realizing it by > moving steps around in the editor. The easiest way to retrieve this > identifier is to use the API and view the workflo

Re: [galaxy-dev] Galaxy API question: workflow_execute

2011-09-06 Thread Dannon Baker
The 'step' in question is the actual workflow step id, since ordering of steps in a workflow is flexible and might be changed without realizing it by moving steps around in the editor. The easiest way to retrieve this identifier is to use the API and view the workflow in question. Here's an ex

Re: [galaxy-dev] Galaxy API question - histories

2011-09-06 Thread Nate Coraor
Roxanne Tapia wrote: > Is there a way to create/view histories via the api, and to associate data in > libraries to histories? > Then to share the histories or make them public, and build a URL to view the > history? Hi Roxanne. To the first three, yes. This was added in the most recent stab

Re: [galaxy-dev] Galaxy API question:

2011-09-06 Thread Nate Coraor
Roxanne Tapia wrote: > Hi, > > I was going through the examples in the README, and everything went along > fine until I tried to upload files from the import directory: > > usage: library_upload_from_import_dir.py key url folder_id file_type > server_dir dbkey > > I don't understand what the

[galaxy-dev] Galaxy API question - histories

2011-09-06 Thread Roxanne Tapia
Is there a way to create/view histories via the api, and to associate data in libraries to histories? Then to share the histories or make them public, and build a URL to view the history? Roxanne Tapia Software Developer 3 B-6, Genome Science Bioscience Division r...@lanl.gov (505)665-0206

[galaxy-dev] Galaxy API question:

2011-09-06 Thread Roxanne Tapia
Hi, I was going through the examples in the README, and everything went along fine until I tried to upload files from the import directory: usage: library_upload_from_import_dir.py key url folder_id file_type server_dir dbkey I don't understand what the last two arguments 'server_dir' and 'db

[galaxy-dev] Galaxy API question: workflow_execute

2011-09-06 Thread Roxanne Tapia
I was trying to use the workflow_execute.py And I can't understand the last argument: usage: workflow_execute.py key url workflow_id history step=src=dataset_id So in step=src=dataset_id step: I think equals the next step #in the history? src: ??? dataset_id: This has to be the dataset id