On Tue, Feb 5, 2013 at 4:28 PM, Luobin Yang wrote:
> Hi, Peter,
>
> You are right, I thought there was already a datatype defined for PSSM, but
> it turned out there isn't one yet. I attached a draft tool configuration
> file for psiblast, it was based on the blastp configuration file, please
> re
Hi, Peter,
You are right, I thought there was already a datatype defined for PSSM, but
it turned out there isn't one yet. I attached a draft tool configuration
file for psiblast, it was based on the blastp configuration file, please
revise as you like.
The options that are specific to psiblast ar
On Mon, Feb 4, 2013 at 7:32 PM, Peter Cock wrote:
>
>
> On Monday, February 4, 2013, Luobin Yang wrote:
>>
>> Hi, Peter,
>>
>> Thanks for pointing them out!
>>
>> The phi-blast and psi-blast actually share the same binary, both use the
>> psiblast program in the NCBI BLAST+ tools. When the option
On Monday, February 4, 2013, Luobin Yang wrote:
> Hi, Peter,
>
> Thanks for pointing them out!
>
> The phi-blast and psi-blast actually share the same binary, both use the
> psiblast program in the NCBI BLAST+ tools. When the option -phi_pattern is
> used, then it does phi-blast searching.
>
> Bes
Hi, Peter,
Thanks for pointing them out!
The phi-blast and psi-blast actually share the same binary, both use the
psiblast program in the NCBI BLAST+ tools. When the option -phi_pattern is
used, then it does phi-blast searching.
Best,
Luobin
On Mon, Feb 4, 2013 at 11:14 AM, Peter Cock wrote:
>
On Mon, Feb 4, 2013 at 5:43 PM, Luobin Yang wrote:
> Hi, Peter,
>
> What difficulties did you see to include psi-blast and phi-blast when you
> were working on the other programs in the NCBI+ suite? I would be interested
> in creating a tool configuration file for each of these two.
>
> Thanks,
>
Hi, Peter,
What difficulties did you see to include psi-blast and phi-blast when you
were working on the other programs in the NCBI+ suite? I would be
interested in creating a tool configuration file for each of these two.
Thanks,
Luobin
On Mon, Feb 4, 2013 at 10:30 AM, Peter Cock wrote:
> On M
Hi, Peter,
I mean the web interface for psiblast on Galaxy system, not the web
interface at NCBI.
Thanks,
Luobin
On Mon, Feb 4, 2013 at 10:30 AM, Peter Cock wrote:
> On Mon, Feb 4, 2013 at 5:20 PM, Luobin Yang wrote:
> > Hi, Galaxy developers,
> >
> > I do not see a web interface for psi-blast
On Mon, Feb 4, 2013 at 5:20 PM, Luobin Yang wrote:
> Hi, Galaxy developers,
>
> I do not see a web interface for psi-blast in NCBI BLAST+ in the tool shed.
> Does it have one?
>
> Thanks,
> Luobin
If you are asking about the ncbi_blast_plus suite in the Tool Shed, this
has most of the key NCBI BL
Hi, Galaxy developers,
I do not see a web interface for psi-blast in NCBI BLAST+ in the tool shed.
Does it have one?
Thanks,
Luobin
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