Re: [galaxy-dev] galaxy cuffdiff running too long

2013-06-26 Thread Robert Chase
Hello, When I install from binary files the boost problem doesn't go away and I get one extra error message in the beginning. Error running cuffdiff. cuffdiff: /usr/lib64/libz.so.1: no version information available (required by cuffdiff) [14:51:54] Loading reference annotation. Warning: No condit

Re: [galaxy-dev] galaxy cuffdiff running too long

2013-06-24 Thread Jeremy Goecks
> > Error running cuffdiff. [12:48:21] Loading reference annotation. > Warning: No conditions are replicated, switching to 'blind' dispersion method > [12:48:33] Inspecting maps and determining fragment length distributions. > terminate called after throwing an instance of > 'boost::exception_deta

Re: [galaxy-dev] galaxy cuffdiff running too long

2013-06-24 Thread Robert Chase
Hello, I have installed "blast" on the server and updated datatypes.xml by copying datatypes.xml.sample. This removes the last three errors from stderror. Still working on: Error running cuffdiff. [12:48:21] Loading reference annotation. Warning: No conditions are replicated, switching to 'blind

Re: [galaxy-dev] galaxy cuffdiff running too long

2013-06-24 Thread Robert Chase
Hello, I have reinstalled cufflinks from source and now I get a new error. I am using the Cuffdiff wrapper (version 0.0.6) and cufflinks-2.1.1. The boxes come back green but there is no output and there is a message in the standard error box. Error running cuffdiff. [21:34:00] Loading reference a

Re: [galaxy-dev] galaxy cuffdiff running too long

2013-06-11 Thread James Taylor
> [galaxy@q ~]$ /bin/cuffdiff > /bin/cuffdiff: /usr/lib64/libz.so.1: no version information available > (required by /bin/cuffdiff) > cuffdiff v2.0.2 (3522) This definitely indicates a problem with your cuffdiff install. Did you build cuffdiff on that system or install in some other way? (very odd