On Mon, 03 Aug 2015 17:30:05 +0200
Björn Grüning bjoern.gruen...@gmail.com wrote:
I would recommend you Galaxy Flavours. We have a few, for example
RNA-Seq, ChIP-seq etc ... join us! :)
That was my first port of call, but they lacked quite a few tools. For
example the RNA-Seq lacked tophat,
Hi,
We have been running galaxy for the last year fine on our website to run
short running scripts ( 10 seconds) and have had no issues.
However, we just upgraded to the latest galaxy source and setup the tools
necessary for NGS mapping and assembly. Our galaxy instance keeps crashing
when jobs
Hi everybody,
similar to the existing mailing list of Galaxy instance admins we are
putting together a mailing list of admins of Tool Shed instances
(especially the public ones) so if you administer one (or more) please
respond to me privately and I will put you on it.
Thank you very much.
Hi,
I am also thinking in doing something similar.
My idea would be to deploy a galaxy docker on demand per project. The
docker would have a galaxy installation that would be configured to
join a cluster. Most of the computation would actually occur on the
cluster.
Each project would thus have
My understanding is a bit limited but I believe the file is used to
track tool shed installed tools that use to belong in the Galaxy
distribution.
I don't think it has much use for a new Galaxy instance and no - I
don't believe there is a way from the command-line to sort of
synchronize this file
Are you running jobs on the head node or just Galaxy? If this is a
consistent problem and you are running jobs on the head ndoe I would
disable that.
As to resume just the failed jobs - this is not currently possible but
really should be ideally.
https://trello.com/c/lxVJy7fs
-John
On Mon, Jul
Sorry for the noise, the original wasn't intended to go the whole mailing
list.
Since I've made public the terrible thing we do locally (git repo) I just
wanted to mention that I'd love to get away from that and start
centralising our tools in the MTS, they're just not release ready, and
